Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01872 ATGACATATAGGGAGGGAGGGAGACAGAGAGAGGTAGAGAGTGAAGGTAAAAAAGGATGCAAGCAATTAATATGTACAACAAGTAACCTATGCAATGTCGAGAACAAAATGATATCCGTCGAGAGAATATTACAGTTCTCTAATATACCAAGTGAAGCGCCATTAATCGTTCAAGATAATAGGCCCGAACCAGAGTGGCCTAAGGAAGGAAAAATTGAATTCCATAACCTTCATATACAATATGAACATGCTGCTCCTATGGTTCTCAAAGGTGTCACTTGCGTATTCCCCGGACAGAAGAAAATTGGAATAGTAGGCAGGACGGGAAGTGGAAAATCTACTCTCGTGCAAGCCCTCTTTCGAGTTGTTGAACCTTTGGAAGGATGCATACTTATTGATGGTGTAGATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGTATTATTCCTCAGGATCCAACCTTGTTTTTAGGTACCGTAAGGACTAACTTGGATCCCTTGGAACAACATACCGATCAAGAACTTTGGGAGGTTCTCAGAAAGTGCCATCTTGCTGAAATAGTACAGCAAGATCCAAGACTTCTTGATGCACCAGGTATATAA 612 0.4085 MTYREGGRQREVESEGKKGCKQLICTTSNLCNVENKMISVERILQFSNIPSEAPLIVQDNRPEPEWPKEGKIEFHNLHIQYEHAAPMVLKGVTCVFPGQKKIGIVGRTGSGKSTLVQALFRVVEPLEGCILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDQELWEVLRKCHLAEIVQQDPRLLDAPGI 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01872 203 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 27 189 - -
Vivi3g01872 203 Gene3D - 55 202 IPR027417 -
Vivi3g01872 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 197 IPR027417 -
Vivi3g01872 203 FunFam ATP-dependent bile acid permease, putative 56 199 - -
Vivi3g01872 203 Pfam ABC transporter 89 190 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01872 Vivi-Chr3 30252517 30253212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01872 70 167 Calmodulin-binding Proteins AT2G36910 33.333 7.63e-14 67.8