Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01853 ATGGAGACCCGTGCCTCAAAGAAAAGAACAACCACCAATCAACCACCGTTTGTCCTCGTTCCCAAAAGGCAGAGAGTTGTTTTGGAACAATTTCCAGATCTCAATATTCCTGATTATCAATCAATACAGAAACTCCAGTGTCGAAAAAACCCTAACCTCAACAAATCTGCATTAACATCAACCATTTCCTTACTTCCTAATTCCAATTCCGATAAGCCAGTTTGTAACAAAAGCAATGCCAAACGTGACATTCAACAGATTGATGAGCCTTATGTATCTGATATCTCAGATTATCTTCGCGCAATGGAGATCCAGGAAAAACGAAGACCAGCGGTTGACTACATGGAAAAAGTTCAGAGATGCATTACTACAAACATGAGAGGGACATTGGTTGATTGGTTAGTTGAGGTTGCAGATGAATACAAACTTCTTCCAGAAACCCTTCATTTAGCTGTTTCCTACATTGACAGATTCCTATCTATTCAATCTCTCAATAGATCCAAGCTTCAGTTGCTTGGTGTTTCCGCCATGCTCATTGCATCGAAGTATGAAGAAATCACTCCACCAAAAGCACTAGATTTCTGCCAAATTACTGATAACACCTATGAACTGCACGAGGTTTTAGAGATGGAAGCTCACATACTCAAATCCCTAAATTTTGAAATGGGAAACCCTAATGTCACCACGTTTTTAAAGAGGTTTGGTGCAATTGCATCTGAGAATCGAAAGACTTCCAATTTGCAGTTTGAATATTTGTGCAACTATCTTGCTGACTTAAGTTTGCTTGACTATGAGTGTATAAAATTCTTGCCTTCTGTTGTGGCTGCCTCTGTTATATTTCTTGCCAAATTTATTATCCGGCCTAGATTACATCCTTGGACTTTGTCCCTCTATGAATCATTGGGTTATGAATCTGATGATTTGAAAGAATGTGTTACTGTTCTACATGATTTGTATTTGTCAAGAAGGGCAGCATCCTTGAAAGCTGTTCGTGACAAATACAAGCAGAAAAAGTTTAAGTGTGTTGCAAACTTGCCTTCCCTGCCTGAGCTGCCAGACTGTTACTTTGAAGAAGTTCATGGCTGA 1086 0.3932 METRASKKRTTTNQPPFVLVPKRQRVVLEQFPDLNIPDYQSIQKLQCRKNPNLNKSALTSTISLLPNSNSDKPVCNKSNAKRDIQQIDEPYVSDISDYLRAMEIQEKRRPAVDYMEKVQRCITTNMRGTLVDWLVEVADEYKLLPETLHLAVSYIDRFLSIQSLNRSKLQLLGVSAMLIASKYEEITPPKALDFCQITDNTYELHEVLEMEAHILKSLNFEMGNPNVTTFLKRFGAIASENRKTSNLQFEYLCNYLADLSLLDYECIKFLPSVVAASVIFLAKFIIRPRLHPWTLSLYESLGYESDDLKECVTVLHDLYLSRRAASLKAVRDKYKQKKFKCVANLPSLPELPDCYFEEVHG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01853 361 Pfam Cyclin, N-terminal domain 94 222 IPR006671 -
Vivi3g01853 361 Gene3D - 94 344 - -
Vivi3g01853 361 FunFam Cyclin superfamily protein, putative 222 294 - -
Vivi3g01853 361 PIRSF Cyclin_A_B_D_E 2 354 IPR046965 GO:0016538|GO:0044772
Vivi3g01853 361 Gene3D - 108 223 - -
Vivi3g01853 361 PANTHER CYCLINS 73 342 IPR039361 -
Vivi3g01853 361 SUPERFAMILY Cyclin-like 89 222 IPR036915 -
Vivi3g01853 361 SMART cyclin_7 229 317 IPR013763 -
Vivi3g01853 361 SMART cyclin_7 132 216 IPR013763 -
Vivi3g01853 361 Pfam Cyclin, C-terminal domain 225 347 IPR004367 -
Vivi3g01853 361 SUPERFAMILY Cyclin-like 225 349 IPR036915 -
Vivi3g01853 361 SMART Cyclin_C_2 225 348 IPR004367 -
Vivi3g01853 361 ProSitePatterns Cyclins signature. 127 158 IPR006671 -
Vivi3g01853 361 FunFam G2/mitotic-specific cyclin 110 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01853 Vivi-Chr3 30024190 30026527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01853 3 360 Core Cell Cycle Gene Families AT5G43080 51.934 5.20e-125 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01853 K06627 - gmx:100787417 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01853 3 30024190 30026527 Vivi3g01853 3 30024190 30026527 ECH