Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01847 ATGGAGAGTGGTGGCTCAATGAAAAGAACAACCAGCAATGAATCACCTTTTACTCCTCTTGATCCAAAAAGGCCGAGAGTTGTTTCGGATGAAATTCCAGATGTTCCTCCTGCTTTTCGGCCTATAACTCCAGATGTTCCTCCTGGTTTTCGGCCTATAACTCCAGATGTTCCTCCTGGTTTTCTGCCTATACAGATTTCCAATTTGGATGAGCCAGTTTGTAACCGAAGAACCAATGCCAAACGTGACAATCAACATATTGATGAGCCTTACGTATCCGACATCTCCGAATATCTTCGCATGATGGAGATCGAGGAAAAACGAAAACCGGCTATTGATTACATTGAAAGAGTTCAGAGATGCATGATGACTACAAACATGAGAGAAAAATTGGTTGATTGGCTAGTTGAGGTTGCAGATGTATACAAACTTTTACCAGAAACTCTTCATCTAGCTGTTTCCTATATTGACAGATTCCTATCTATCCAATCTCTCAATACATCCAAGCTTCAGTTGCTTGGGATTTCTGCTATGCTCATTGCGTCCAAGTATGAAGAAGTCAATCCAACAAGAGCGGTACAGTTCTGCCAAATTACTACCTATGAACTGCATGAGGTTTTAGAAATGGAAGCTCGCATACTCAAGTCCCTAAATTATGAAATGGGAAACCCTAATGTCATCACATTTTTAAGGACGTTTGCTGTGATTGCTTGTGAGAATCAAACGACTTCCCATTCCCAGTTTAAATATTTGTGCAACTATCTTGCCGATTTGAGCCTGCTTGACTACGAGTGTCTACAATTTAAGCCTTCTACATTGGCTGCCTCCGTTATATTTCTGGCCAAATTTATTATCCGGCCTCGAGTAAATCCTTGGACTTTGTCCCTCCATGAATCTTTGGGTTATGGATCTGATGATTTGGAAGATTGTGCTACCATTCTACATGATTTGTATTTGTCAAGAAGGGCAGCATCCTTGAAAACTGTCCGTGACAAATACAAGCGGAGCAAGTACAAATGTGTAGCAAACTTGTCTTCCCCGCCTGAGCTGCCAGAAAGTTACTTTGAAGATGTTCATGCCTTCTACCAGTGCAATGGAGGCGCGAACATCACGACAGACGATGAGTGGGATTGA 1134 0.4189 MESGGSMKRTTSNESPFTPLDPKRPRVVSDEIPDVPPAFRPITPDVPPGFRPITPDVPPGFLPIQISNLDEPVCNRRTNAKRDNQHIDEPYVSDISEYLRMMEIEEKRKPAIDYIERVQRCMMTTNMREKLVDWLVEVADVYKLLPETLHLAVSYIDRFLSIQSLNTSKLQLLGISAMLIASKYEEVNPTRAVQFCQITTYELHEVLEMEARILKSLNYEMGNPNVITFLRTFAVIACENQTTSHSQFKYLCNYLADLSLLDYECLQFKPSTLAASVIFLAKFIIRPRVNPWTLSLHESLGYGSDDLEDCATILHDLYLSRRAASLKTVRDKYKRSKYKCVANLSSPPELPESYFEDVHAFYQCNGGANITTDDEWD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01847 377 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Vivi3g01847 377 Gene3D - 94 343 - -
Vivi3g01847 377 SUPERFAMILY Cyclin-like 84 221 IPR036915 -
Vivi3g01847 377 Pfam Cyclin, N-terminal domain 94 221 IPR006671 -
Vivi3g01847 377 SUPERFAMILY Cyclin-like 224 348 IPR036915 -
Vivi3g01847 377 FunFam Cyclin A1 211 343 - -
Vivi3g01847 377 PANTHER CYCLINS 82 339 IPR039361 -
Vivi3g01847 377 ProSitePatterns Cyclins signature. 128 159 IPR006671 -
Vivi3g01847 377 Gene3D - 108 222 - -
Vivi3g01847 377 MobiDBLite consensus disorder prediction 1 48 - -
Vivi3g01847 377 MobiDBLite consensus disorder prediction 1 18 - -
Vivi3g01847 377 SMART Cyclin_C_2 224 347 IPR004367 -
Vivi3g01847 377 SMART cyclin_7 133 215 IPR013763 -
Vivi3g01847 377 SMART cyclin_7 228 316 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01847 Vivi-Chr3 29917689 29919515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01847 5 359 Core Cell Cycle Gene Families AT5G43080 43.697 2.42e-99 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01847 K06627 - gmx:100786875 340.117