Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01845 ATGATGGAGATCGAGGACAAACGAAAACCGGCTATTGATTACATTGAAAAAGTTCAGAGATGCATGACTACAAACATGAGAGGAAAATTGGTTGATTGGTTAGTTCAGGTTGCAGATACATACAAACTTCTCCCAGAAACTCTTCATCTAGCTGTTTCCTATATTGACAGATTCCTATCTATTCAATCTCTCAATAAATCCAAGCTTCAGTTGCTTGGTATTTCAGCTATGCTCATTGCGTCCAAGTATGAAGAAGTCAATCCAACAAGAGCGGTAGAATTCTGCCAAATTACTACCTATGAGCTGCATGAGGTTTTAGAAATGGAAGCTCGCATACTCAAGTCCCTAAATTATGAAATGGGAAACCCTAATGTCATCACATTTTTAAGGCATGGATTTTTTTTTTCATATCTTAAATTTGAATATCTAAACTTTGCTACTTCCCATTCACAGTTTAAATATTTGTGCAACTATCTTGCCGATTTGAGCCTGCTTGACTACGAGTGTCTACAATTCAAACCTTCTACATTGGCTGCCTCTGTTATATTTCTTGCCAAATTTATTATCCGGCCTCGAGTAAATCCTTGGACTTTGTCCCTCCATGAATCTTTGGGTTATGGATCTGATGATTTGGAAGATTGTGCTACCATTCTACATGAGTTGTATTTGTCAAGAAGGGCAGCATCCTTGAAAACTGTTCGCAATAAATACAAGCTGCGCAAGTTTAAATGTGTAGCAAACTTGCCTTCCCCACCTGAGCTGCAAGAAAGTTACTTTGAAGATGTTCATGCCTCTTACAAGTGCAATACAGACGTGAACATTGCGACAGACGATGAGTGGGATTGA 846 0.3865 MMEIEDKRKPAIDYIEKVQRCMTTNMRGKLVDWLVQVADTYKLLPETLHLAVSYIDRFLSIQSLNKSKLQLLGISAMLIASKYEEVNPTRAVEFCQITTYELHEVLEMEARILKSLNYEMGNPNVITFLRHGFFFSYLKFEYLNFATSHSQFKYLCNYLADLSLLDYECLQFKPSTLAASVIFLAKFIIRPRVNPWTLSLHESLGYGSDDLEDCATILHELYLSRRAASLKTVRNKYKLRKFKCVANLPSPPELQESYFEDVHASYKCNTDVNIATDDEWD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01845 281 ProSitePatterns Cyclins signature. 27 58 IPR006671 -
Vivi3g01845 281 Pfam Cyclin, C-terminal domain 123 250 IPR004367 -
Vivi3g01845 281 Gene3D - 10 121 - -
Vivi3g01845 281 FunFam G2/mitotic-specific cyclin 10 121 - -
Vivi3g01845 281 Gene3D - 1 247 - -
Vivi3g01845 281 Pfam Cyclin, N-terminal domain 3 120 IPR006671 -
Vivi3g01845 281 PANTHER CYCLINS 3 243 IPR039361 -
Vivi3g01845 281 SUPERFAMILY Cyclin-like 142 252 IPR036915 -
Vivi3g01845 281 SMART cyclin_7 32 114 IPR013763 -
Vivi3g01845 281 SMART cyclin_7 132 220 IPR013763 -
Vivi3g01845 281 PIRSF Cyclin_A_B_D_E 1 263 IPR046965 GO:0016538|GO:0044772
Vivi3g01845 281 SMART Cyclin_C_2 123 251 IPR004367 -
Vivi3g01845 281 SUPERFAMILY Cyclin-like 1 120 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01845 Vivi-Chr3 29879228 29880774 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01845 1 263 Core Cell Cycle Gene Families AT5G43080 50.943 3.26e-96 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01845 K06627 - gmx:100787417 303.908