Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01843 ATGCAGACTCGCGGTTCAAGAAAGAGGGCAAACGCTGAACCAATTGTGCTTAACCCTAAGAAACAGAGGGTTGTGTTGGGGGATCTTCCCAATCTACAGAATGCATCTGTTTCTGAAACTCAATCCAGTGGAAAAGTTCAACCTCGGAAGAATTCCAAGGGAAAGAAATCCGCAACTGATGTTTATTCTTTTGAGAGTTTCGATTTGGATAAACCGGTTCAGAGAAAGTACAACGCAAAACATGAAATTCAACATATTGTTGAACCGTATGCATCTGATATATCCAACTATCTTCGCCACATGGAGATGGAGAAAAAGAGAAGACCTATGGTTGGATACATCGAGAATGTTCAGAGATTCATTACAACAAACATGAGGGGAATATTGGTGGATTGGTTAGTTGAAGTTGCGGAAGAGTACAAGCTTCTTCCTCAAACGCTTCATCTAGCTGTTTCTTACATTGATAGGTTCTTATCTATTAATGTTGTTAACAGATCCAAACTTCAGTTGCTTGGTGTTTCTTGCATGCTCGTTGCCTCGAAATATGAAGAAATCACTCCACCAAAGGCGGTAGATTTCTGTCACATTACTGATAACACCTATGAGTTGAAAGAGGTTATTAAAATGGAAGCTGAAATACTTAAGTCACTAAACTTTGAAATGGGAAACCCTCATGTTAACACATTTCTAAATGAGTTTGCTGGGTTTGCTACTGAGAATCAAAAGACTTCAAAATTGCAAATGGAGTTTCTATGTAATTACCTTGCTGAGCTAAGCTTGTTGGACTATGAATGTATAAGATTTTTGCCTTCTACTGTTGCTGCATCTGTTATATTTCTTGCCAGATTTATTATTCGACCTGGTGTACATCCTTGGACTTCATCACTTAGTGATTCCTTGGGTTATAAATCTGCTGAGTTGGAAGAATGTGTACTCATTTTACATGATTTATATTTGTCAAGAAAGGCGGCGTCATTGAAAGCTGTTAGGGAGAAATACAAGCAACACAGGTTCAAATATGTTGCAAACTTGCCTTCACCACCAGAGGTGCCAAAACAATATTTTGAAGAAGAATGA 1077 0.3835 MQTRGSRKRANAEPIVLNPKKQRVVLGDLPNLQNASVSETQSSGKVQPRKNSKGKKSATDVYSFESFDLDKPVQRKYNAKHEIQHIVEPYASDISNYLRHMEMEKKRRPMVGYIENVQRFITTNMRGILVDWLVEVAEEYKLLPQTLHLAVSYIDRFLSINVVNRSKLQLLGVSCMLVASKYEEITPPKAVDFCHITDNTYELKEVIKMEAEILKSLNFEMGNPHVNTFLNEFAGFATENQKTSKLQMEFLCNYLAELSLLDYECIRFLPSTVAASVIFLARFIIRPGVHPWTSSLSDSLGYKSAELEECVLILHDLYLSRKAASLKAVREKYKQHRFKYVANLPSPPEVPKQYFEEE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01843 358 PIRSF Cyclin_A_B_D_E 2 356 IPR046965 GO:0016538|GO:0044772
Vivi3g01843 358 SUPERFAMILY Cyclin-like 86 221 IPR036915 -
Vivi3g01843 358 MobiDBLite consensus disorder prediction 29 48 - -
Vivi3g01843 358 Pfam Cyclin, N-terminal domain 93 221 IPR006671 -
Vivi3g01843 358 PANTHER CYCLINS 56 335 IPR039361 -
Vivi3g01843 358 SMART Cyclin_C_2 224 347 IPR004367 -
Vivi3g01843 358 Pfam Cyclin, C-terminal domain 224 346 IPR004367 -
Vivi3g01843 358 MobiDBLite consensus disorder prediction 28 57 - -
Vivi3g01843 358 FunFam G2/mitotic-specific cyclin 109 220 - -
Vivi3g01843 358 Gene3D - 107 222 - -
Vivi3g01843 358 FunFam Cyclin superfamily protein, putative 221 293 - -
Vivi3g01843 358 ProSitePatterns Cyclins signature. 126 157 IPR006671 -
Vivi3g01843 358 Gene3D - 93 343 - -
Vivi3g01843 358 SMART cyclin_7 131 215 IPR013763 -
Vivi3g01843 358 SMART cyclin_7 228 316 IPR013763 -
Vivi3g01843 358 SUPERFAMILY Cyclin-like 224 348 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01843 Vivi-Chr3 29833595 29835771 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01843 3 357 Core Cell Cycle Gene Families AT5G43080 51.955 1.10e-130 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01843 K06627 - gmx:100786875 426.402