Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01821 ATGGCTATGGAAGCGCTTAACTCACCAACCACCGCTACTCCTTTCACTTCCTTCGAGGAACCGAATCACAGCTACCTCGATACACCATGGACGAAAGGTAAACGTTCTAAGCGTTCTCGGATGGATCAATCTTCATGCAGTGAAGAAGAGTATCTCGCTCTCTGTCTCATCATGCTCGCTCGCAGCGGTAACAACAGCAACAACAACTCCACCGCGAAACAGATTCTATCTGATACTGAATCGGCGCCGGCGCCGGTAACCACCGTTAAACTCACTCACAAATGCTCTGTTTGCAACAAAGCTTTTTCATCTTACCAAGCACTCGGCGGACACAAAGCCAGCCACAGAAAACTCGCGCTTATGTCCGCCGCCGAAGATCAGAATCAGACTACCACCACCTCATCCGCCGTGACTACCAGCTCTGCATCCAACGGAGGTAAAATCAAGACTCACGACTGTTCCATCTGTCACAAATCCTTCCCTACCGGACAGGCTTTGGGTGGACACAAGCGTTGCCACTACGAAGGCGGTGTAGGTGGCGGAGCCGGAAGTAGCGCCGTAACCGCCTCTGAAGGAGTTGGATCCTCTCACAGTCAGCACCGTGATTTTGATCTTAACCTCCCGGCTTTTCTGGACTTTTCAAAGAAGTTTCTCGTGGATGACGAGGTTTCCAGCCCTCTTCCTGCCGCAAAGAAGCCATTTCTATTCAAGATTGAAATTCCTCATCACTGA 732 0.5068 MAMEALNSPTTATPFTSFEEPNHSYLDTPWTKGKRSKRSRMDQSSCSEEEYLALCLIMLARSGNNSNNNSTAKQILSDTESAPAPVTTVKLTHKCSVCNKAFSSYQALGGHKASHRKLALMSAAEDQNQTTTTSSAVTTSSASNGGKIKTHDCSICHKSFPTGQALGGHKRCHYEGGVGGGAGSSAVTASEGVGSSHSQHRDFDLNLPAFLDFSKKFLVDDEVSSPLPAAKKPFLFKIEIPHH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01821 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Vivi3g01821 243 SUPERFAMILY beta-beta-alpha zinc fingers 93 173 IPR036236 -
Vivi3g01821 243 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 208 IPR044653 GO:0003700
Vivi3g01821 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Vivi3g01821 243 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Vivi3g01821 243 MobiDBLite consensus disorder prediction 1 43 - -
Vivi3g01821 243 MobiDBLite consensus disorder prediction 124 146 - -
Vivi3g01821 243 Gene3D Classic Zinc Finger 91 173 - -
Vivi3g01821 243 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vivi3g01821 243 Pfam C2H2-type zinc finger 151 174 - -
Vivi3g01821 243 Pfam C2H2-type zinc finger 93 117 - -
Vivi3g01821 243 SMART c2h2final6 151 173 IPR013087 -
Vivi3g01821 243 SMART c2h2final6 93 115 IPR013087 -
Vivi3g01821 243 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01821 Vivi-Chr3 29489515 29490525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01821 1 240 C2H2 Transcription Factor Family AT1G27730 47.390 1.13e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g01821 zf-C2H2_6 1.6e-11 CL0361