Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01785 ATGGAGAATAGTTCAGAAGGTTGTAGTAAAAGAGGGAAGGTATTGAGTATGAGTATGAGGAAAAGGTCTACGCTTCTTTATTGGTTGATAGATAATCAAGTTTTGGCTTCAGGGACTAATGTGTTATGTCGTGGTGGTAATGATATAGTCAAAAAAGGGAGTATATTTAGTGATGGTATAATTTGTGATTGTTGTCAAGAGAGTTTCACTATGACTGCATTTGAGGCTCATGCTTGTTGTACAAGGCATAGACCGTCTAGTAGTATTTTCTTAGAAGACGGGAGGTCGTTGTCTGAATGTCAAAGAGAGGCTCTGAGTTTACGTGGTGAAAAGATGGAAAGATACAACGATACTATTTGTTTGGTTTGTGGTTTAGGAGGTGACTTAATACTATGCGATCAATGTCCTTCTTCGTTTCACCTTGGTTGCTTAGGTCTTGATCGAGTTCCGGATGGTGATTGGTTTTGTCCGACTTGTTGTTGCAAAATATGTCATCAACCAAAATGTGAACAAGAAGAAGGTCCGGATCAGAAGGATAGTAACGTTGTTATTATGTGTGTTCAATGTGAGCAAAAATTTCACTTTGGATGCTTAAAGGCTATAGGATTTGGTGACATGGAGGGCAATGCTGAAAAGAAGAATTGGTTTTGTAGCGTAGATTGTGGGAAAATATTCGTATCTCTAAAAAATATGTTAGGTAAACCAATCAAGATTGCAAATGATCTAACTTGGACATTGTTTAAGAATGTGAGTAATGGTGATGATGATCATGGTGGAGATTTTACTTCTGATGAGGTTAGTCAAAAGGAGAGTAAGTTGAATGCAACTCTTGGTGTATTGCGTGAGAGTTTCGACCCAATTGTTGATGTTATAACCAAAAGAGAATTGGTTGAAGATATTGTTTTTAGTAGATACTCAGAACATAACCGATGTAACTTTAGTGGTTTCTATAATGTGATTTTAGAGAAAATGGATGAAGTGATTTCAGTGGCAACTATAAGAATTTATGGTTCAAATGTTGCAGAAATAGTTTTTGTGGCTACCAAAAAACAACATAGAAGACAAGGGATGTGTTGGTTGTTGATGGATGAGCTTGAGAGACAGTTGACTTGCTTGAAAATAAGGAGCTTGGTTTTGCATTCCTCTAAAAGTACTATAAACACCTGGACAAAATCCTTTGGGTTTGCGATAATGTCTGGTCACGACAAGCGTCGATTTATTAATCATACTCTTTTAGAATTTCAAAATACTATCATGTGTCTTAAATCACTTGATAGACGGGTATGA 1287 0.366 MENSSEGCSKRGKVLSMSMRKRSTLLYWLIDNQVLASGTNVLCRGGNDIVKKGSIFSDGIICDCCQESFTMTAFEAHACCTRHRPSSSIFLEDGRSLSECQREALSLRGEKMERYNDTICLVCGLGGDLILCDQCPSSFHLGCLGLDRVPDGDWFCPTCCCKICHQPKCEQEEGPDQKDSNVVIMCVQCEQKFHFGCLKAIGFGDMEGNAEKKNWFCSVDCGKIFVSLKNMLGKPIKIANDLTWTLFKNVSNGDDDHGGDFTSDEVSQKESKLNATLGVLRESFDPIVDVITKRELVEDIVFSRYSEHNRCNFSGFYNVILEKMDEVISVATIRIYGSNVAEIVFVATKKQHRRQGMCWLLMDELERQLTCLKIRSLVLHSSKSTINTWTKSFGFAIMSGHDKRRFINHTLLEFQNTIMCLKSLDRRV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01785 428 SMART PHD_3 119 160 IPR001965 -
Vivi3g01785 428 SMART PHD_3 161 221 IPR001965 -
Vivi3g01785 428 Pfam Tify domain binding domain 53 104 IPR032308 -
Vivi3g01785 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 223 IPR013083 -
Vivi3g01785 428 SUPERFAMILY FYVE/PHD zinc finger 112 169 IPR011011 -
Vivi3g01785 428 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 264 417 IPR000182 GO:0016747
Vivi3g01785 428 CDD NAT_SF 319 380 - -
Vivi3g01785 428 ProSiteProfiles Zinc finger PHD-type profile. 117 162 IPR019787 -
Vivi3g01785 428 PANTHER PHD FINGER PROTEIN 12 19 425 IPR042163 GO:0003714|GO:0045892
Vivi3g01785 428 Pfam PHD-finger 119 161 IPR019787 -
Vivi3g01785 428 Pfam Acetyltransferase (GNAT) family 298 395 IPR000182 GO:0016747
Vivi3g01785 428 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 301 402 IPR016181 -
Vivi3g01785 428 Gene3D - 261 424 - -
Vivi3g01785 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01785 Vivi-Chr3 28910295 28911775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01785 9 372 PHD Transcription Factor Family AT5G58610 40.355 7.05e-85 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g01785 Acetyltransf_1 1.1e-08 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01785 - - psat:127079034 729.939