Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01776 ATGGACGACGCCTTTGCTAGATCTATTCCTGAGGTCCTTGGCTTCTTTGGAGTGGACCCAACAAAGGGTTTATCCGACGCTCAGGTTGTAAAACATGGCAGACTTTATGGTACAAACGTGCTGCATGAAGATCAAAGAGCTCCGTTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTTGTGAAGATACTAATTGCAGCTGCTCTTATATCATTTATTCTCGCATTAATTAATGGTGAAACAGGCTTGATGGCGTTTCTGGAGCCTTCTGTTATTCTGATGATATTGGCTGCAAATGCAGCTGTGGGAGTGATCACAGAAACAAATGCCGAAAAAGCTCTTGAGGAGCTACGTGCTTATCAAGCTGATGTGGCAACTGTCTTGCGAAGTGGTTGTTTTTCCATACTTCCTGCAACTGAACTTGTTCCTGGGGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCTGATATGAAGATGATTGAATTGTTAAGTAATGAAGTACGGGTTGATCAAGCTATTCTTACAGGTGAGAGCAGCTCGGTCGAAAAAGAGCTTAAAACTACCACAACAGCAAATGCAGTATACCAGGACAAAACAAATATTCTTTTCTCGGGAACAGTTGTGGTTGCTGGTAGGGCAAGAGCTATTGTGGTGGGAGTTGGTCCTAACACTGCCATGGGCAGCATACGTGATTCAATGTTGCGAACAGAGGATGAGGTGACACCGTTGAAAAAGAAGCTGGACGAGTTTGGCACTTTTTTGGCCAAGGTTATTGCAGGGATATGCGTGTTGGTTTGGATTGTAAATATTGGTCACTTTCGTGACCCTTCTCATGGTGGTTTTGTGCACGGGGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCCGTTGCAGCAATTCCTGAAGGTCTCCCTGCTGTTGTAACAACGTGTTTGGCTCTTGGAACAAAGCGAATGGCTAGGTTGAATGCCATTGTTCGCTCTTTGCCGTCCGTTGAGACCTTGGGCTGCACCACTGTAATTTGCAGTGACAAAACTGGGACTCTAACTACCAATATGATGTCAGTTGCAAAGATATGTATTGTCGAGTCTGCAAAAAGTAGTCCTTTTGTTACGGAATACGGTGTCAGTGGAACAACATATGCACCTGAAGGTATAATCTTTGACACGGCAGGGGTGCAGCTTGACATTCCAGCTCAATCGCAATGCCTTCTTCACATGGCTATGTGTTCTGCTCTTTGCAATGAGTCAACCCTGCAGTATAATCCTGATAAAGGGAAGTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTACGTGTTTTGGTAGAAAAGGTCGGTCTCCCGGGTTTTAATTCTATGCCGTCAGCATTGAATATGTTGAGCAAGCATGAGCGCGCTTCTTACTGTAACCATTATTGGGAGGAACAATTTAGAAAGTTAGATATTTTGGAATTTTCTAGAGATCGGAAAATGATGAGTGTCCTTTGCAGCCGGAACCAGTTACATGTTTTATTTTCAAAAGGTGCTCCAGAAAGTATTATCTCTAAATGTACAACCATTCTATGCAATGGTGATGGTTCTGTCATGCCACTTACTGCTGATATTCGATCAGAGCTGGACTCAAAGTTCAACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTTGCTTTGGCTCTCAAATGGATGCCCTCAGATCAACAGAAGGTGTCCTTTGATGATGAGAAGGACCTCACGTTTATTGGATTGGTTGGGATGCTGGATCCACCAAGAGACGAAGTAAGAAATGCCATGCTTTCATGTATGACTGCTGGCATACGCGTTATAGTTGTCACTGGAGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCATTTGATAGATTTTACTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCAGCCCTGCAACAAACTATAGCATTGCAGCGTATGGCACTTTTTACCAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCATTGCAGCACCAAAATGAAGTGGTTGCAATGACTGGTGATGGAGTCAATGATGCACCTGCCCTGAAGAAGGCAGATATAGGAATTGCTATGGGATCAGGAACTGCTGTTGCTAAGAGTGCTTCAGACATGGTCCTGGCTGATGACAATTTTGCTTCAATTGTTGCGGCTGTGGCAGAGGGAAGGGCTATATACAATAATACAAAGCAGTTTATTAGATACATGATTTCTTCCAACATTGGGGAAGTAGTATGTATATTTGTGGCTGCAGTGCTTGGAATACCTGATACCCTGGCCCCTGTCCAGTTGCTTTGGGTCAATTTGGTCACTGATGGATTGCCTGCCACTGCTATTGGCTTCAATAAGCAAGACTCTGATGTGATGAAGGTTAAGCCTCGAAAGATGCTGATTAAGGATGGTTGTTGGGTTGGAAGGAGGAACATATGA 2484 0.4348 MDDAFARSIPEVLGFFGVDPTKGLSDAQVVKHGRLYGTNVLHEDQRAPFWKLVLKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRSGCFSILPATELVPGDIVEVSVGCKIPADMKMIELLSNEVRVDQAILTGESSSVEKELKTTTTANAVYQDKTNILFSGTVVVAGRARAIVVGVGPNTAMGSIRDSMLRTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFVHGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICIVESAKSSPFVTEYGVSGTTYAPEGIIFDTAGVQLDIPAQSQCLLHMAMCSALCNESTLQYNPDKGKYEKIGESTEVALRVLVEKVGLPGFNSMPSALNMLSKHERASYCNHYWEEQFRKLDILEFSRDRKMMSVLCSRNQLHVLFSKGAPESIISKCTTILCNGDGSVMPLTADIRSELDSKFNSFAGKETLRCLALALKWMPSDQQKVSFDDEKDLTFIGLVGMLDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLIDFTEHSYTASEFEELPALQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKMLIKDGCWVGRRNI 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01776 827 SFLD C1.7: P-type atpase like 326 743 - -
Vivi3g01776 827 FunFam Calcium-transporting ATPase, putative 210 341 - -
Vivi3g01776 827 SMART Cation_ATPase_N_a_2 3 77 IPR004014 -
Vivi3g01776 827 ProSitePatterns E1-E2 ATPases phosphorylation site. 347 353 IPR018303 -
Vivi3g01776 827 Gene3D - 55 813 - -
Vivi3g01776 827 NCBIfam HAD-IC family P-type ATPase 92 371 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi3g01776 827 NCBIfam HAD-IC family P-type ATPase 661 776 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi3g01776 827 FunFam Sodium/potassium-transporting ATPase subunit alpha 584 730 - -
Vivi3g01776 827 Gene3D - 355 592 IPR023299 GO:0000166
Vivi3g01776 827 PANTHER CALCIUM-TRANSPORTING ATPASE 12 813 - -
Vivi3g01776 827 Gene3D - 22 237 - -
Vivi3g01776 827 Pfam Cation transporter/ATPase, N-terminus 8 72 IPR004014 -
Vivi3g01776 827 PRINTS Sodium/potassium-transporting ATPase signature 762 783 - -
Vivi3g01776 827 PRINTS Sodium/potassium-transporting ATPase signature 338 359 - -
Vivi3g01776 827 PRINTS Sodium/potassium-transporting ATPase signature 118 138 - -
Vivi3g01776 827 Pfam Cation transporting ATPase, C-terminus 775 813 IPR006068 -
Vivi3g01776 827 SUPERFAMILY Calcium ATPase, transduction domain A 124 235 IPR008250 -
Vivi3g01776 827 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 813 IPR023298 -
Vivi3g01776 827 Pfam E1-E2 ATPase 122 324 - -
Vivi3g01776 827 NCBIfam calcium-translocating P-type ATPase, SERCA-type 53 813 IPR005782 GO:0005388|GO:0006816|GO:0016020
Vivi3g01776 827 SUPERFAMILY HAD-like 578 739 IPR036412 -
Vivi3g01776 827 FunFam Calcium-transporting ATPase 112 237 - -
Vivi3g01776 827 FunFam Calcium-transporting ATPase 355 592 - -
Vivi3g01776 827 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 687 822 - -
Vivi3g01776 827 Gene3D - 342 735 IPR023214 -
Vivi3g01776 827 Pfam haloacid dehalogenase-like hydrolase 582 705 - -
Vivi3g01776 827 PRINTS P-type cation-transporting ATPase superfamily signature 173 187 - -
Vivi3g01776 827 PRINTS P-type cation-transporting ATPase superfamily signature 345 359 - -
Vivi3g01776 827 PRINTS P-type cation-transporting ATPase superfamily signature 607 617 - -
Vivi3g01776 827 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Vivi3g01776 827 PRINTS P-type cation-transporting ATPase superfamily signature 585 596 - -
Vivi3g01776 827 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Vivi3g01776 827 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 352 589 IPR023299 GO:0000166
Vivi3g01776 827 Pfam Cation transport ATPase (P-type) 415 524 - -
Vivi3g01776 827 SFLD p-type atpase 326 743 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01776 Vivi-Chr3 28685389 28714040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01776 1 814 Primary Pumps ATPases(2) AT1G10130 83.784 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01776 K05853 - gmx:100783509 1474.91