Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01757 ATGAGCAGTAGAATCAATTTCAACATGGATTCTGATAAAGCCAAACTCTTCGTTGGTGGCATTTCTCGCGACACTACCGAAGATATCCTCAAACACTATTTCGCTAAATACGGTGACGTTTTGTATTCCACCATCTCCTTCGACCGCGCTACTCGAATCCCAAGAGGGTTTGGCTTCGTTACATTCTCTGATATTGGTTCAGCTGAAAAAGCCCTTCAAGATAACCATGTTATTCTTGGACGAAAGGTAGAGGTGAGAAAAGCTATACCAAGAAGTGAGCAGTTACAACAAAATCAGTTACAGAATCGAGGGGGAAGTGGCTATGGTAATTATGAATGTAACAGTGATCAGATTAAGACTAAGAAGATTTTTGTAGGAGGTTTACCTGCTAATATATCTGTGGAGGAGTTTAAGAGATACTTTGAGGGGTTTGGTACGATAACTGATGTGGTGGTGATGCAGGATAGTGTGACTCATAGGCCGAGGGGGTTTGGGTTTATCACTTATGAGAATGAAGAATCCGTGCAGAATGTTACGGTGAAAAGTTTTCATGATTTGAATGGTAGGCTGGTTGAGGTTAAGAGGGCTGTTCCGAGGGAGGGGAATGTTGGTAATGATCGTTTTGGTGGGAAAATAAGGTATAGGATTGATAGAGGAGCGGCTGAGATGTTTCCTCATTCTAGTCCTAGTAACATGGTTAATGGATTTTCGCCTTTGCCTTGGTATCCTAGTGATGTGGGATATGGGTATGGATCAAATGCTGCCTATGGTTGTTGGTATCCTATGGGTGCGTATGGTGGGAACGGATATGTAGCTCCATCTGATGTTTATCGGAACTTCTGGTATGGGCAAATGGTAACTGGTCATCAGGCGCCGCCTTATGTTAATGCTATGCCAAGTGTTGCATATGTGGGTGGTGTTGGAATTGTAGGCGGTGGTGCTGAAACTTGGGGCTACAATGCCGTTCTTGAGTCCCCAACAAATTATAAATTTGGCCAACCGTTAATCGCGAATGGATTTGTTCCATGCAATATGCCATTGCCTCATGGTGTAAAGCAAAATGTTGGCACTTCAAGTTTTAAACAAAGTAATGGGGAAATTTCTATCTGA 1110 0.4279 MSSRINFNMDSDKAKLFVGGISRDTTEDILKHYFAKYGDVLYSTISFDRATRIPRGFGFVTFSDIGSAEKALQDNHVILGRKVEVRKAIPRSEQLQQNQLQNRGGSGYGNYECNSDQIKTKKIFVGGLPANISVEEFKRYFEGFGTITDVVVMQDSVTHRPRGFGFITYENEESVQNVTVKSFHDLNGRLVEVKRAVPREGNVGNDRFGGKIRYRIDRGAAEMFPHSSPSNMVNGFSPLPWYPSDVGYGYGSNAAYGCWYPMGAYGGNGYVAPSDVYRNFWYGQMVTGHQAPPYVNAMPSVAYVGGVGIVGGGAETWGYNAVLESPTNYKFGQPLIANGFVPCNMPLPHGVKQNVGTSSFKQSNGEISI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01757 369 SUPERFAMILY RNA-binding domain, RBD 10 111 IPR035979 GO:0003676
Vivi3g01757 369 SUPERFAMILY RNA-binding domain, RBD 96 208 IPR035979 GO:0003676
Vivi3g01757 369 Gene3D - 118 207 IPR012677 -
Vivi3g01757 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Vivi3g01757 369 Gene3D - 6 117 IPR012677 -
Vivi3g01757 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 83 IPR000504 GO:0003723
Vivi3g01757 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 178 IPR000504 GO:0003723
Vivi3g01757 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Vivi3g01757 369 SMART rrm1_1 15 86 IPR000504 GO:0003723
Vivi3g01757 369 SMART rrm1_1 122 194 IPR000504 GO:0003723
Vivi3g01757 369 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 9 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01757 Vivi-Chr3 28472816 28474503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01757 16 261 Eukaryotic Initiation Factors Gene Family AT4G34110 26.877 9.54e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01757 K14411 - gmx:100816822 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01757 3 28472816 28474503 Vivi3g01757 3 28472816 28474503 ECH