Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01717 ATGAACACCATGAATTTCGATATCTCTCTTTGTCTTGGTCTTGGCCTCCATGAACAAAGACAAAAGAAAAAGAAGGAGAATCCATGTTCTAACTCAAAAGCATATCAATATTCTCTAACATTAGGAATAGGATCCCTTGATAATATTCATGAGAAAAATAATCAAGTTACTACAAAGATTGAACCAGATGCTTCTAACTCTACCAGCATGCATGTGTCTTCATTTTCCAACTCCATTAACAGCATCAAGAGGGAGAGAGATGATCATCAAGTATACAACCTTGAAGAGAAGATTCCATTTGTTGATTTTGATGTTGATGAAAATTGTAGCTCCAGCAAGAAGAAACTTAGGCTTACCAAAGAACAATCCACAGTTTTGGAAGATACCTTCAAAGACCATTCTACCCTCAATCCGAAGAAAAAGCTAGAATTGGCAAAGAAGCTGAATCTTCGGACAAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGGGCAAGGACAAAGCTGAAACAAACGGAAGTGAACTGTGAAGCACTGAAGAAATGCTATGAAACTCTAACAAAAGAGAACAAGAGGCTTGAGGAGGAGTTGAAAGAGCTCAAAATGATGAAAACAATGGCAGAACCATTTAACCATACGCAGCTTCCTGTAGCCGGTATTACGGTTTGCCCTTCTTGTAAGACAATTTGCAAGGGCAATAGCAACAGTAGTGTCAATGGAACCTTTCACACAAAGGTTGAAAGTCACTTGTATACAAAGACGAATAACTATATGTTTACCCAATCTTCTGCAGCTATTGCTAGCTAG 804 0.3856 MNTMNFDISLCLGLGLHEQRQKKKKENPCSNSKAYQYSLTLGIGSLDNIHEKNNQVTTKIEPDASNSTSMHVSSFSNSINSIKRERDDHQVYNLEEKIPFVDFDVDENCSSSKKKLRLTKEQSTVLEDTFKDHSTLNPKKKLELAKKLNLRTRQVEVWFQNRRARTKLKQTEVNCEALKKCYETLTKENKRLEEELKELKMMKTMAEPFNHTQLPVAGITVCPSCKTICKGNSNSSVNGTFHTKVESHLYTKTNNYMFTQSSAAIAS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01717 267 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Vivi3g01717 267 Pfam Homeodomain 113 167 IPR001356 GO:0003677
Vivi3g01717 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 237 - -
Vivi3g01717 267 Coils Coil 168 205 - -
Vivi3g01717 267 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Vivi3g01717 267 SMART HOX_1 111 173 IPR001356 GO:0003677
Vivi3g01717 267 Pfam Homeobox associated leucine zipper 169 202 IPR003106 GO:0006355|GO:0043565
Vivi3g01717 267 Gene3D - 119 165 - -
Vivi3g01717 267 SUPERFAMILY Homeodomain-like 102 170 IPR009057 -
Vivi3g01717 267 CDD homeodomain 113 170 IPR001356 GO:0003677
Vivi3g01717 267 SMART halz 169 212 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01717 Vivi-Chr3 27797044 27798218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01717 106 228 Homeobox Transcription Factor Family AT4G37790 65.041 4.23e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi3g01717 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01717 K09338 - gmx:100790927 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01717 3 27797044 27798218 Vivi3g01717 3 27797044 27798218 ECH