Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01714 ATGATCAAGATTCCAAACCTTAAAATCCCCGAATGGGACACGACACAATACGAGGGAGGATCATTCTTAAACCGTTTCATTTCAAACGACACCGACACACAAATTTCCGAAGATTTCGACTTACCCGTTCATGTTTTCTCTTCCGACCATTTCCGAATGTTCGAATTCAAAGTGAGAAAATGCCAGCGTGGCCGGTCTCACGACTGGACGGAATGTCCGTACTCTCACCCCGGCGAGAAAGCTCGCCGGAGAGACCCTCGGAAGTTTAACTACTCCGGGACACCTTGCTCGGAGTTTCGCAGATTAGGAAGCTGTACTAAAGGTGATTCGTGTTACTTCGCACATGGTGTTTTCGAATGCTGGCTTCATCCTTCTCGCTACAGGACACAGCTTTGTAACGACGGGACAGCTTGTCGCCGGCGAGTGTGTTTCTTTGCTCACACCGTTGATCAACTTCGTGTCTCGGGTAAGGCTTCACCTGAAACGTTTGTTTCTTCTCCTACTTCGGTTCTTGAATCTCCTAATGGAAACTCCAGATACGGTGGCGTTCCGGTGAATATGCGGGAGTTAGTTGACTGCATGAGAGATGTTCAAATTATGGATTCCGGTCGGGTGGAGTCTCCAAGGGGTGGGTTTTTTGGTCTTCCATCAAGGTATGAAGGGGTTAGTATGGAGAGGGTGGAATCTGGAAGAGATCCTAGGGCCAAAATCTATGGGAAACTCTTCAACGATAGTGTTGTTTCGGTTCCTGTTCCTGATTTTGGATGGGTTTCGGAACTGGTTAACTGA 789 0.4791 MIKIPNLKIPEWDTTQYEGGSFLNRFISNDTDTQISEDFDLPVHVFSSDHFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRRDPRKFNYSGTPCSEFRRLGSCTKGDSCYFAHGVFECWLHPSRYRTQLCNDGTACRRRVCFFAHTVDQLRVSGKASPETFVSSPTSVLESPNGNSRYGGVPVNMRELVDCMRDVQIMDSGRVESPRGGFFGLPSRYEGVSMERVESGRDPRAKIYGKLFNDSVVSVPVPDFGWVSELVN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01714 262 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 116 IPR000571 GO:0046872
Vivi3g01714 262 SUPERFAMILY CCCH zinc finger 90 120 IPR036855 GO:0046872
Vivi3g01714 262 Gene3D - 85 159 - -
Vivi3g01714 262 ProSiteProfiles Zinc finger C3H1-type profile. 90 118 IPR000571 GO:0046872
Vivi3g01714 262 PANTHER UNKEMPT FAMILY MEMBER 25 261 IPR045234 -
Vivi3g01714 262 SMART c3hfinal6 126 149 IPR000571 GO:0046872
Vivi3g01714 262 SMART c3hfinal6 90 117 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01714 Vivi-Chr3 27766607 27767740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01714 40 194 C2H2 Transcription Factor Family AT5G12850 50.968 2.95e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g01714 zf-CCCH 5.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01714 - K23048 mtr:11430634 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01714 3 27766607 27767740 Vivi3g01714 3 27766607 27767740 ECH