Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01707 ATGTTGGAAGTTGAGTGGTATATGAATAATATGCCAACTCATAATGAACAAGCTGTCCCAAATTTTCAAATCAAAACCCAACAACAAAACAACTTTGTTTCTGCTTCAGATCCAAACAGCTATGTTTCTATGCAACCTCTGGGTTCCTCCTCTTTTCCGCCACCATCCAACTTCACTTTCTCTCATATACTCAATACTGAAGATAATATCAACAACATCATCAACCCCACCACCACCAACAATAATCCATTTGGAAATGTCTTCAGTCTCGAATCCCAAAGTGACTGCCTAACTCCATATCAAAGGGATCAGACAGACTTATCGGCCCAAACCGGCTATTCATCAAAGTTCCTAGAAACTAGTGCAGTTGGATTTGTACCAATAGGTTTACAAGAGGAAAGTGCCTTTGGTGGTGGTTCAGGGTCTTCAAGTTCCATGTTTTTTAGTAATGACAAAGTCTCTATGCTTTTAGAGAATCCTTCACCAGTTCTTGCATCGCCTAATTTGTTGGAAAATAAGGATATGAGCTCTAACATTAGCAAGGAAAATAAGTTGGAACCATTGTCGATTCCACAGTTTACGTCGACATGGTTGAAGGAGTTTGATCATAAGTTGGAGAAAGTGGTAAATGGGGAGGTTGATGGGGGATTGAATTATGAGTCTAAGGAGGATGCTGAAATTGGTGGCAATAAAGTTGGCAATGATGATAAAGATGAAAATCATGTTGGTGAGGTGGATCGAAAAGGCAAAAAGAAGGAAAAGTCGTCAAAGAATCTCTTGGCTGAAAGGATGAGAAGGAAGAAGCTCGTTGATAAGATGCACATTCTTCGTTCTCTTGTGCCAATTATCAGCAAGATGGATAAAGCTTCAATACTTGGAGATGCTATTGATTACTTGAATGGGTTACAAAAAAAAGTTAATGATCTTCAAAATGAAATAGAGTCCATTTATCTTGGATCATCACTGGCACCCACCACTTCGACCCTTCCTGTACAAGTGAATGGAGAATTATGCCATAGCAATGCGCTAAGCCCTAGAAATCAATCAACAAAGGTAGAGGCATGGGAAATGGAAGATGGAACTGTCAACATCCATATGTTTTGTGCCTACAAGCCAGGTGTTTTGGTTTCAATTATGAAGGCATTTGATATCCTTGGATTGGACATTCACCAAGCTAACATAAGTTGTTTCAATGGCTTTACCATAGATGTATACAAAGTTGAGCAATGCAGACAAGGTCAGAAAGTGAACACTGAACTAATTAAAGAAGTGTTGGTGAATGCAGTGGATCACCAGATGGCTTGA 1305 0.3939 MLEVEWYMNNMPTHNEQAVPNFQIKTQQQNNFVSASDPNSYVSMQPLGSSSFPPPSNFTFSHILNTEDNINNIINPTTTNNNPFGNVFSLESQSDCLTPYQRDQTDLSAQTGYSSKFLETSAVGFVPIGLQEESAFGGGSGSSSSMFFSNDKVSMLLENPSPVLASPNLLENKDMSSNISKENKLEPLSIPQFTSTWLKEFDHKLEKVVNGEVDGGLNYESKEDAEIGGNKVGNDDKDENHVGEVDRKGKKKEKSSKNLLAERMRRKKLVDKMHILRSLVPIISKMDKASILGDAIDYLNGLQKKVNDLQNEIESIYLGSSLAPTTSTLPVQVNGELCHSNALSPRNQSTKVEAWEMEDGTVNIHMFCAYKPGVLVSIMKAFDILGLDIHQANISCFNGFTIDVYKVEQCRQGQKVNTELIKEVLVNAVDHQMA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01707 434 Gene3D - 243 317 IPR036638 GO:0046983
Vivi3g01707 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Vivi3g01707 434 MobiDBLite consensus disorder prediction 219 258 - -
Vivi3g01707 434 Coils Coil 292 312 - -
Vivi3g01707 434 CDD ACT_UUR-ACR-like 364 424 - -
Vivi3g01707 434 SMART finulus 259 308 IPR011598 GO:0046983
Vivi3g01707 434 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 115 424 - -
Vivi3g01707 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 320 IPR036638 GO:0046983
Vivi3g01707 434 Pfam Helix-loop-helix DNA-binding domain 259 303 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01707 Vivi-Chr3 27662183 27671223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01707 216 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.485 5.14e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g01707 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01707 - - psat:127084450 590.497