Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01700 ATGAGAGTAGCTAGAAAATGCTCATATTGTGGAACTATAGGACACAATTCAAGGACTTGCAATAACAGTCTCAGTCACAAACACAAACAGCTTTATCTTTGGTCTTCTTCACCTTCATCACATAGCTCTTTATCAATATATTCCTCCTCGCTTACTCGGTTTCGTGTAAATGAAAATTCAAACAATTGCTCCGGAAGTTGTCTCATATCTACAATCCCATGCAACAAAAAAGGTGTGTTGTGGACCGAGGATGAACACTATATGTTTCTCAGAGGACTTGAGAAACATGGGAAGGGTAACTGGAGAAGTATATCTAGAGATTTTGTGACAACAAGAACACCAACCCAAGTGGCAAGTCATGCACAAAAACATTTTATTCGACTGATTTCGAATAGCTTCATGAATAGAACACAACACAATCTCAACCTCCTTAGTGTGGGGTGTGAAAGTAAAACAAGAACTTTTGAAGCATTTCATGAACCAAGTGAAGCTTTTGGCAGAAGAAACTTTCTCCCTCACTGGCTTTCTCATCATCAATATTCAGTTCTGAAATGGCCTAACTCTTCAACTTCAACTTCAAGGAATTGTAGTCCTGAGAAAGAAGCACCTGATTTAGAACTCAAACTTGCAACTCCTATGCCATTATTAGAGCTAACAGAGGCATGCTCTTTAAGCCATTTAAGTTAA 687 0.3843 MRVARKCSYCGTIGHNSRTCNNSLSHKHKQLYLWSSSPSSHSSLSIYSSSLTRFRVNENSNNCSGSCLISTIPCNKKGVLWTEDEHYMFLRGLEKHGKGNWRSISRDFVTTRTPTQVASHAQKHFIRLISNSFMNRTQHNLNLLSVGCESKTRTFEAFHEPSEAFGRRNFLPHWLSHHQYSVLKWPNSSTSTSRNCSPEKEAPDLELKLATPMPLLELTEACSLSHLS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01700 228 ProSiteProfiles SANT domain profile. 81 129 IPR017884 -
Vivi3g01700 228 NCBIfam myb-like DNA-binding domain, SHAQKYF class 76 127 IPR006447 GO:0003677
Vivi3g01700 228 Gene3D - 80 129 - -
Vivi3g01700 228 SUPERFAMILY Homeodomain-like 75 128 IPR009057 -
Vivi3g01700 228 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Vivi3g01700 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Vivi3g01700 228 PANTHER TRANSCRIPTION FACTOR KUA1 5 136 - -
Vivi3g01700 228 ProSiteProfiles Myb-like domain profile. 81 125 IPR001005 -
Vivi3g01700 228 FunFam transcription factor MYB1R1 79 130 - -
Vivi3g01700 228 CDD SANT 81 125 IPR001005 -
Vivi3g01700 228 SMART sant 77 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01700 Vivi-Chr3 27556915 27558071 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g01700 Myb_DNA-binding 8.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01700 - - psat:127084418 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01700 3 27556915 27558071 Vivi3g01700 3 27556915 27558071 ECH