Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01682 ATGGGTGCTTCTGGAAAATGGGTGAAAGCATTAATCGGACTCAAAAAACACGACAAAGATGAACATGTGAAGGAGGGTGTGAAGAGTAAGAAATGGAGGTTATGGAGAAGTTCATCTGGTGATAACGGTTCCTGGAAAGGTTTTAAAGGTAACAACTCTCATAAAGCAGTTTCTGAAGGTTCTGAATCTCCAACTGCTGCAGAAGCTTACACCGCCGCTGTAGCCACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTCGTTAGGCAAGAATGGGCTGCTATAAGAATCCAAACCACTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCACTAGTTAGGGGTAGGCAAGTGAGGAAGCAAGCTGCGGTGACATTGAGGTGCATGCAGGCGTTGGTTCGAGTTCAGGCTCGAGTGAGGGCTCGTCGAGTGAGGATGTCGATGGAGGGACAAGCTGTGCAGAATATGCTTAATGAGCGGCGGACAAAGCTTGAACTTTTGAAGGATGCTGAGGAAGGGTGGTGTGATAGTATAGGAACATTGGAAGATGTGAAATCGAAGATTCAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAAAGAGCACTTGCATACTCTCTTGCTCAAAAGCAGCAATGCAGATCAACTTCAAGTACTTATTCACAAACCGCTGCCTCGTTTTCATCTCTCAAGAATCCCGAGATGAACAAAGCTAATGGAGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCGTGGGAGACAAGATTGATGGAACAATCCCATGCTGAAAGCTTAGATAAAACGCCTCCACCACCTCCGAAGAAATTTGTGGAACCCTTTGTAAGCTCTAATTCAAAACCATGCTCAGTCAATATCAAGAGGAACAATGTTACAACAAGGATTTCCGCTAAGCCTCCTCCCCACATCTGTCAAGCTACTCGTTCGTCCTCTAGTCCAAGTTCCGAGTTTCGGTATGACGAGAGTTCTGCATCATCTTCTATTTGTACATCAGCAACACCAATGTCAGGGAACACTTATGAAAGGACTGAGGATAGTAACAACAACTCTAGGCCAAATTACATGAACCTAACGCAATCAACCAAGGCGAAGCTAAAATCGGGTAATAATCCAATGTATAACCGAGCTCAAAGGCAACAGTCAATGGACGAGTTTCAGTTTATGAGGAGGGCTGCAGGTTTCTCTAATGGAGATTCAAGAAGTATAGCTGCTTCTGACCATTCACTCAACTTTTCTAGGCCACTTCACCTATCAACTCACATGGATAAAAGCTCGGTGAGGCCACGGTGA 1341 0.4549 MGASGKWVKALIGLKKHDKDEHVKEGVKSKKWRLWRSSSGDNGSWKGFKGNNSHKAVSEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKLELLKDAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQQCRSTSSTYSQTAASFSSLKNPEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLDKTPPPPPKKFVEPFVSSNSKPCSVNIKRNNVTTRISAKPPPHICQATRSSSSPSSEFRYDESSASSSICTSATPMSGNTYERTEDSNNNSRPNYMNLTQSTKAKLKSGNNPMYNRAQRQQSMDEFQFMRRAAGFSNGDSRSIAASDHSLNFSRPLHLSTHMDKSSVRPR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01682 446 PANTHER IQ-DOMAIN 5-RELATED 1 415 - -
Vivi3g01682 446 Gene3D - 87 141 - -
Vivi3g01682 446 SMART iq_5 112 133 IPR000048 GO:0005515
Vivi3g01682 446 SMART iq_5 89 111 IPR000048 GO:0005515
Vivi3g01682 446 MobiDBLite consensus disorder prediction 43 62 - -
Vivi3g01682 446 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Vivi3g01682 446 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Vivi3g01682 446 MobiDBLite consensus disorder prediction 320 372 - -
Vivi3g01682 446 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Vivi3g01682 446 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Vivi3g01682 446 MobiDBLite consensus disorder prediction 311 372 - -
Vivi3g01682 446 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01682 Vivi-Chr3 27342949 27345215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01682 1 440 IQD Protein Family AT2G26180 59.819 1.84e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01682 - - gmx:100799714 607.831