Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01646 ATGGATGGTAATGGAAAGCATCAAGGTGGTGGAGTAAGCATGATGGAGAAGAAAGGTGAAGTGGTGGTGGGGATTCCGAATGTGGGTGGTGAGAGTAATGACTTTGAGCATGATCATGATCATGGGTTGAAGCTGTTTGAATCTATGCTTCAAGGTGAAAACGAACTTGCTTCAAAGTCACCACCTTTTGACTGTGCTTCCCCTGAGATAAGGTTCACCCCAAGCCCTAATAAACCTCCAAAATATCCCACTACAAATGCAAACCTTACCAAGAGGAAATCTTTTGTGAGATCGGTGTATTCTAAACCCAAATCAAGATTTGGTGAACAACCTTACCATGTTGATGGAACGGTTCTAGAGGAGAATGTTTTGCAGGAACAGTTAGCTGTTAGTTCATCTTATAAGAACTCATTTAATAAAGGTTCATATTCATCCAATTACAAATCTGAATCGGTTAATAGAAGTGTTTCGATTGCGTCTTTCCTCACTACTAGAACATCTTGGAGGGCATCTCCAAGTCATGCTGGTGAGGATCCTGATGAAATTATTTACAAGAAAGTTGAGTTTAGTAAGGGCAAGCATAAGAGACTAACGACTAGGACTTCGATCGAATTGTTTGTGTTTGCGTTGATTGCGGGGAACATGCTGGCTAGCCTGACTGTTGAGGAACTGAGAAGGATACATATGTGGAGTTTGCGGCTTTGGAGGTGGTGGATGCTTGCGATGGTGACCTTTTGTGGCATGTTAGTTACAAAGTGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTTTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGAAATGCGTCCAGGTTTTCATTTGGATCGGTTTGGTTCTTCTCACATGGGTTCTTTTTATCAATCATGAGGTCCCGCGATCTAAACTGGCCGGAAAGATTTTAGATGGTGTAACATGGACTCTTGTTTCCCTTCTAATTGGAGCATTTCTGTGGGTCGTAAAGACATTGTTGCTGAAGATTTTGGCTTCAAATTTCCATGTGAAGTCTTTCTTTGATCGAATTCAAGAATCAATCTTCCATCAATATGTTCTGCAAACTCTCTCCGGGCCTCCACTTTTGGACGAGGACGAGAAGATTGGAAGATCGCAGAGGTTGAGCCATTTTAGTTTCCAGAGTATTACCAATAAAGGTGACACAAAGAAAGAGGTTATTGATATGGCAAAACTTCACAGCATGAAGCAAGAGAAAGTTTCGTCGTGGACGATGAAGATTTTGGTAGATTCAGTGATGAATTCAAGGCTGTCAACAATCTCTAGTTCACTAGATGAAAGTTTTTATGATGTAGAAAATAAACAAACTGATAAAGAAATTACAAATGAGATGGAAGCAACTGCTGCAGCCTATCATGTTTTCAGAAATGTCGCTGCTTCCCCTAGTTGCACGGACATTGACGAGAATGAACTCCGTAGATTCATGATTAAGGAAGAAGTTCCTTGGGTATTTCCTTTACTGGCACAGACAGAGACAGGGCTAATTACCAGAAAATCTTTAACAGATTGGGTGTTGAAGGTATATCAAGAACGCAGAGCACTTGCACACGCCTTAAGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACAGTGGTTGTAGTACTTGTGACCGTACTAGTGTGGCTTCTTCTTATGGAAATTGCAAACTCAAAAGTACTTTTATTCATTGCATCGCAGCTAGTACTTGCATCTTTCATGTTTGCAAACACATGCAAGAATATATTTGAAGCCATCATCTTTGTGTTTATAATGCATCCATTCGACGTTGGTGATCGATGTGTTGTAGATGGTGTCGAGCTAGTGGTCGAAGAAATGAATCTATTGACAACCGTATTCTTGAAACTTAGTAATGAAAAGCTGTATTATCCAAACTCTGTCCTGGCCGTAAAACCCATTAGCAATTATTACAGAAGCCCGGATATGATTGATTCTTTAGAGTTCTGGATTGATTTTAAGACACCAGCAGAGAAAATTGGAGCTCTGAATGAAAAAATAAAGAGGTATGTGGAGAGGACTCCACAATACTGGCATGCTAATTTCGACTTGTTTGTGAGGGAGATTGAAAATGTAAATAGGATTAAGATGGGTCTTTATGTTATTCACACAATGAACTTCCAAGACGTTGGGGCGAAACTCAGGCGGAAAAGTGAACTAGTGATGGAAGTAAAGAGAATATTTGAAGAGCTCAAAATCATATACAACCTTCTTCCACAAGCTGTTCATCTCAGACACACTGAACCTGATACCAGTTAA 2313 0.399 MDGNGKHQGGGVSMMEKKGEVVVGIPNVGGESNDFEHDHDHGLKLFESMLQGENELASKSPPFDCASPEIRFTPSPNKPPKYPTTNANLTKRKSFVRSVYSKPKSRFGEQPYHVDGTVLEENVLQEQLAVSSSYKNSFNKGSYSSNYKSESVNRSVSIASFLTTRTSWRASPSHAGEDPDEIIYKKVEFSKGKHKRLTTRTSIELFVFALIAGNMLASLTVEELRRIHMWSLRLWRWWMLAMVTFCGMLVTKWFMHIVVFLIEMNFLLRKKVLYFVHGMKKCVQVFIWIGLVLLTWVLFINHEVPRSKLAGKILDGVTWTLVSLLIGAFLWVVKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLLDEDEKIGRSQRLSHFSFQSITNKGDTKKEVIDMAKLHSMKQEKVSSWTMKILVDSVMNSRLSTISSSLDESFYDVENKQTDKEITNEMEATAAAYHVFRNVAASPSCTDIDENELRRFMIKEEVPWVFPLLAQTETGLITRKSLTDWVLKVYQERRALAHALSDTKTAVKQLNKLVTVVVVLVTVLVWLLLMEIANSKVLLFIASQLVLASFMFANTCKNIFEAIIFVFIMHPFDVGDRCVVDGVELVVEEMNLLTTVFLKLSNEKLYYPNSVLAVKPISNYYRSPDMIDSLEFWIDFKTPAEKIGALNEKIKRYVERTPQYWHANFDLFVREIENVNRIKMGLYVIHTMNFQDVGAKLRRKSELVMEVKRIFEELKIIYNLLPQAVHLRHTEPDTS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01646 770 FunFam Predicted mechanosensitive ion channel 606 655 - -
Vivi3g01646 770 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 91 765 IPR016688 -
Vivi3g01646 770 Gene3D - 606 655 IPR023408 -
Vivi3g01646 770 PIRSF Memb_At2g17000 24 770 IPR016688 -
Vivi3g01646 770 SUPERFAMILY Sm-like ribonucleoproteins 596 655 IPR010920 -
Vivi3g01646 770 Pfam Mechanosensitive ion channel 546 751 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01646 Vivi-Chr3 26762380 26765773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01646 58 762 Mechanosensitive Ion Channel Family AT5G12080 55.712 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01646 K22048 - gmx:100777617 1023.08