Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01645 ATGGATGGTAATAATAAGCATCAAGGTGGTGAAGTAAGCATGATGGAGAAGAAAAGAGAAGTGGTGGTGGTGATTCCAAATGTGGGTGGAGAGAGCCATGGCCAAGATCATCATGATCATGAGTTGAAAGTGTTTGAATCTTTGCCTCAATGTGAAAATGAGCTTCCTTCAAAGTCACCACCACCTTTAAACTATGTTTCCCCTGAGATAATGTTCACACCAAGCCCAAATAAACCCCCAAAAGCTCCCATAAGAAAGACTTTTGTAAGATCAGTGTATTCCAAGCCCAAATCAAGATTTGGTGAACAACCTTACCCTATTGATGGAAACCTTTTTGAAGAGAATTTTGTTTCTTCAAATTTGCAAGAAGAATTGGCTGCTAGTTCACCTTATAGGAACTCATTCAATAAAGGATCATATTCACCTGATAACATATCCGGAACGGTTAATCGAACTGTTTCGTTTACTTCTGTCGTCACGCCTAGAACACCTATGACGGAATCTGCAGTTTCTTCTGATGATGAGGATCCTGATGAAATTATTTACAAGAAAGTTGAATTTAGTAAAGGCAATCGTAAGATACTAACGACTAAGGTTTCGATCGAGTTGTTTGTGTTTGTCAGCATTGCAGGTTGCTTATTGGTTAGCTTAGCAGTTGAGGAACTTAGAAGGACAAAGATTTGGAGTTTAGGGCTTTGGAGGTGGTGTATGCTTGCCATGGTGACCTTTTGTGGCATGCTAGTTACCAAATGGTTCATGCACTTTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGATTTGTGTCCAGGTTTTCATTTGGATCAGTTTGGTTCTTCTCACATGGACGCTTTTTATACATCACGGGATCCAGCGATCCAAATTGGTCGCAAAGATTATGAATGATGTAACATGGACTCTTGTTTCCCTTCTCATTGGAGCATTTCTGTGGGTTATAAAGACATTGTTGCTAAAGATTTTGGCATCGAATTTCCATGTGAAATCTTTCTTTGATCGAATTCAAGAATCGATTTTCCATCAATATGTTCTGCAAACTCTCTCTGGGCCTCCACTTATGGAAGAGGGTGAGAAAATCGGCGGATGTCAAAGTTTTGGTCGTTTTAGTTTCACGAGTATAACTGGTAAAGATGGCACAAAGAAAGAGGTTATCGATATGGAAAAACTTCATAAGATGAAGCAAGAGAAAGTTTCCGCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTGTCCACAATCTCTAATTCACTGGATGAAAGTTTTTATGATGTAAAAAATGAACAAACTGGTAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTATGTTTTCAAGAATGTTGCTGCTTCCCCTTGTTGCAAGGACATTGATGAGGATGAACTCCGTCGCTTCATGAATAAGGAAGAAGTTCTTTTGGTATTTCCCCTACTGGCTGATGCAGAGACAGGGCTAATTACCAGAAAATCTTTAGCAGATTGGGTGTTGAAGGTATACCAAGAACGCAGAGCACTCGCACACGCCTTAAACGACACTAAAACAGCCGTTAAGCAATTAAACAAGCTTGTGACAGCATTCCTAGTAGTGGTGATTGTAGTCGTGTGGCTTCTTCTAATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACGTGCAAGAATATATTCGAATCCATCGTCTTCGTGTTTGTAATGCATCCATTTGACGTTGGTGATCGATGTGTTATAGATGGTGTCGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTATTCTTGAAGCTTAATAATGAAAAAATGTATTATCCAAATTCTGTCCTCGCCATGAAACCGATTAGCAATTATTACAGAAGCCCGAATATGACTGAAGGTGTAGAGTTTTCCATTGATTTTACGACACCAGCGGAGAAAATTGGAGCACTGCAAGAAAAAGTAAAGAGGTATTTGGAGAGGAATCCACAATACTGGCATCCAGTGTTTTGCTTGTTTGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTTTATGTTACTCACACAATGAATTTTCAAGACTTTGGGGAGAAATGCAAAAGGACAAGTGAATTAGTGATTGAAGTAAAGAGAATATTTGAAGAGCTCAATATCAGATACAGCCTTCTTCATCAAGGTGTTCATCTCAGACACATGGAACCTGATACTAGTTAA 2307 0.3879 MDGNNKHQGGEVSMMEKKREVVVVIPNVGGESHGQDHHDHELKVFESLPQCENELPSKSPPPLNYVSPEIMFTPSPNKPPKAPIRKTFVRSVYSKPKSRFGEQPYPIDGNLFEENFVSSNLQEELAASSPYRNSFNKGSYSPDNISGTVNRTVSFTSVVTPRTPMTESAVSSDDEDPDEIIYKKVEFSKGNRKILTTKVSIELFVFVSIAGCLLVSLAVEELRRTKIWSLGLWRWCMLAMVTFCGMLVTKWFMHFVVFLIEMNFLLRKKVLYFVHGMKICVQVFIWISLVLLTWTLFIHHGIQRSKLVAKIMNDVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEGEKIGGCQSFGRFSFTSITGKDGTKKEVIDMEKLHKMKQEKVSAWTMKILVDAVMNSRLSTISNSLDESFYDVKNEQTGKEITNEMEATAAAYYVFKNVAASPCCKDIDEDELRRFMNKEEVLLVFPLLADAETGLITRKSLADWVLKVYQERRALAHALNDTKTAVKQLNKLVTAFLVVVIVVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFESIVFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKMYYPNSVLAMKPISNYYRSPNMTEGVEFSIDFTTPAEKIGALQEKVKRYLERNPQYWHPVFCLFVKEIENVNKIKMGLYVTHTMNFQDFGEKCKRTSELVIEVKRIFEELNIRYSLLHQGVHLRHMEPDTS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01645 768 Gene3D - 604 653 IPR023408 -
Vivi3g01645 768 Pfam Mechanosensitive ion channel 545 750 IPR006685 GO:0016020|GO:0055085
Vivi3g01645 768 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 91 765 IPR016688 -
Vivi3g01645 768 PIRSF Memb_At2g17000 4 768 IPR016688 -
Vivi3g01645 768 FunFam Predicted mechanosensitive ion channel 604 653 - -
Vivi3g01645 768 SUPERFAMILY Sm-like ribonucleoproteins 594 653 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01645 Vivi-Chr3 26728681 26732198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01645 49 760 Mechanosensitive Ion Channel Family AT5G12080 56.906 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01645 K22048 - gmx:100803107 1054.66