Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01632 ATGGCAACTCATCTGCTAAGGCTTTCCCTCTCCTCGCCACCTAACCTCTCTTTCAATTACACACTCAATCATCACCACCACCACCCCCACCACTTCACTTCTCTACTACCCTCAAAACCACGTCGCTACCACCACCTTAACCACCGCCAAATTACCCGCCCATATTTCTCCGTCTCCAACTCTTTCAACACTGAAATTCGTTCACCGGAATCACCTCTTCTTCAAAACCATCCTCAGAGAAAAGACTCGCCGGTCCTTCTCGATGTAACCGGAATGATGTGTGGCGGCTGCGTCTCCCGAGTCAAAACCATCCTCTCCGCCGACGACCGAGTAGACTCCGTCGTGGTCAACATGTTGACCGAAACCGCAGCTGTTAAGCTTAAACGCCTCGAAGAGGAACACGCGAGCGTCGCTGAGAGCCTTGCTCTGCGACTGAGCGAATGCGGGTTTCCGACTAAGAAGAGGGAGTCGGGTTTGGGAGTGGCGGAAAATGTTAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAACTTCTCGCCAAGAGCCGTAACCGCGTCGCTTTCGCTTGGACTTTGGTCGCACTCTGCTGTGGATCGCATGCTTCACATATTTTTCATTCTTTCGGGATTCATATTGCTCATGGACCGGTTATGGAATTTCTTCATAATTCATATGTGAAAGGTGGTTTAGCTTTGGGCGCGTTATTGGGACCTGGAAGAGAGTTACTCTTTGATGGTCTAAATGCTTTCAAGAAAGGGTCGCCAAATATGAACTCTCTCGTGGGATTTGGTTCAATAGCTGCTTTCATCATCAGTTCGATCTCACTACTGAATCCCGGGCTGGCATGGGATACATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAAGAAAAAGCAAGGATTCAGGCGTCTAGTGATATGAATGAATTACTTTCACTAATATCTACTCAGTCAAGACTTGTCATTACATCATCAGAAGGTTCCCTATCTACTGACAGTGTGCTGAGCTCTGATTCAATTTGTGTGGAAGTTCCAACTGACGATATTCGAGTAGGAGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTTGTTGCAGGAAGAAGCGTTGTGGACGAATCCATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTTTCAGCAGGAACTATAAACTGGGATGGTCCTTTAAGGATTGAATCTACTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTTCAAAGGCTTGCAGACTCAATAGCAGGGCCATTTGTATTTAGCATAATGACTCTCTCAGCAGCAACATTTGCATTTTGGTATTTTTTTGGAACACACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCGGAAGGAGATCCTCTGCTTTTAAGTTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCATGTGCGCTGGGTCTTGCCACACCAACAGCAATCCTAGTTGGCACCTCACTTGGCGCAAGAAAAGGACTTCTAATCAGAGGAGGGGATGTGCTAGAACGCTTGGCCGGTGTAAATTACATTGCTCTAGATAAGACAGGAACCCTTACCAGAGGAAAACCAGTTGTTTCTGCCATAGGCTCTATTGAGTATGGAGAGTCGGAAATTCTTCAGATTGCTGCGGCAGTGGAGAAAACTGCATCTCATCCAATAGCAAAGGCTATTACTAACAAAGCTGAGTCTTTAGAATTGGTCCTTCCACTCACAAAAGGACAGATAGTTGAACCAGGTTTTGGAACCTTGGCAGAAATAGATGGGCGTTTGGTTGCAGTTGGGTCTCTAGAATGGGTCCGTGATCGTTTCAAGACTAGAATGAACCCATCTGCTTTGATGAATCTTGAACGTGCTTTGATGAATCATTCATCGAGTACATCATCTTCGAAATACTCTAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACATTGTGCGTGAAGATGCTGAATCTACTGTAATGAGGCTCAAGAAGAAGGGGATTAAAACGGTCCTCTTATCAGGAGACAGGGAAGAAGCAGTTGCAATAATAGCTGAGACAGTTGGAATTGAAAACAATTTTGTTAAAGCATCCTTGTCTCCTCAGCAGAAATCTGCATTTATTTCATCTCTAAAAGCTGCTGGACATCGTGTTGCGATGGTAGGTGATGGGATCAATGATGCGCCCTCTTTGGCCGCAGCTGATGTTGGGATAGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCAGATGCAGCATCCATCATACTTCTGGGCAACAAAATTTCACAGGTTATTGATGCATTAGACCTAGCACAAGCAACAATGGCAAAAGTTTACCAAAATTTGTCTTGGGCAGTGGCTTACAATGTTATTGCCATTCCCATTGCTGCTGGTGTGTTACTTCCCCAATTTGACTTTGCTATGACACCATCACTTTCAGGAGGACTAATGGCTATGAGCTCCATCTTGGTGGTCAGCAACTCACTGCTTTTAAAGCTTCATGGGTCTCGGACCTCTGGAAAGGGAACACTGCAGTGA 2676 0.4548 MATHLLRLSLSSPPNLSFNYTLNHHHHHPHHFTSLLPSKPRRYHHLNHRQITRPYFSVSNSFNTEIRSPESPLLQNHPQRKDSPVLLDVTGMMCGGCVSRVKTILSADDRVDSVVVNMLTETAAVKLKRLEEEHASVAESLALRLSECGFPTKKRESGLGVAENVRKWKELVKKKEELLAKSRNRVAFAWTLVALCCGSHASHIFHSFGIHIAHGPVMEFLHNSYVKGGLALGALLGPGRELLFDGLNAFKKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDTSFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSLSTDSVLSSDSICVEVPTDDIRVGDSVLVLPGETIPIDGRVVAGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIESTSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVFSIMTLSAATFAFWYFFGTHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGVNYIALDKTGTLTRGKPVVSAIGSIEYGESEILQIAAAVEKTASHPIAKAITNKAESLELVLPLTKGQIVEPGFGTLAEIDGRLVAVGSLEWVRDRFKTRMNPSALMNLERALMNHSSSTSSSKYSKTVVYVGREGEGIIGAIAISDIVREDAESTVMRLKKKGIKTVLLSGDREEAVAIIAETVGIENNFVKASLSPQQKSAFISSLKAAGHRVAMVGDGINDAPSLAAADVGIALQNEAQENAASDAASIILLGNKISQVIDALDLAQATMAKVYQNLSWAVAYNVIAIPIAAGVLLPQFDFAMTPSLSGGLMAMSSILVVSNSLLLKLHGSRTSGKGTLQ 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01632 891 Pfam E1-E2 ATPase 346 533 - -
Vivi3g01632 891 Gene3D - 309 440 - -
Vivi3g01632 891 SFLD C1.7: P-type atpase like 536 819 - -
Vivi3g01632 891 SUPERFAMILY Calcium ATPase, transmembrane domain M 286 547 IPR023298 -
Vivi3g01632 891 Pfam Heavy-metal-associated domain 87 149 IPR006121 GO:0046872
Vivi3g01632 891 SUPERFAMILY HMA, heavy metal-associated domain 85 128 IPR036163 GO:0046872
Vivi3g01632 891 SUPERFAMILY HAD-like 551 874 IPR036412 -
Vivi3g01632 891 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Vivi3g01632 891 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Vivi3g01632 891 PRINTS P-type cation-transporting ATPase superfamily signature 766 785 - -
Vivi3g01632 891 PRINTS P-type cation-transporting ATPase superfamily signature 386 400 - -
Vivi3g01632 891 PRINTS P-type cation-transporting ATPase superfamily signature 553 567 - -
Vivi3g01632 891 Coils Coil 165 185 - -
Vivi3g01632 891 NCBIfam HAD-IC family P-type ATPase 338 858 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi3g01632 891 FunFam Copper-transporting ATPase PAA2, chloroplastic 564 697 - -
Vivi3g01632 891 ProSitePatterns E1-E2 ATPases phosphorylation site. 555 561 IPR018303 -
Vivi3g01632 891 ProSiteProfiles Heavy-metal-associated domain profile. 83 153 IPR006121 GO:0046872
Vivi3g01632 891 PANTHER ATP7, ISOFORM B 77 879 - -
Vivi3g01632 891 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 555 647 IPR023299 GO:0000166
Vivi3g01632 891 CDD P-type_ATPase_HM 185 876 - -
Vivi3g01632 891 SFLD p-type atpase 536 819 IPR044492 -
Vivi3g01632 891 CDD HMA 87 151 IPR006121 GO:0046872
Vivi3g01632 891 Gene3D - 544 817 IPR023214 -
Vivi3g01632 891 Gene3D - 77 157 - -
Vivi3g01632 891 Pfam haloacid dehalogenase-like hydrolase 549 780 - -
Vivi3g01632 891 Gene3D - 564 697 IPR023299 GO:0000166
Vivi3g01632 891 NCBIfam heavy metal translocating P-type ATPase 257 877 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vivi3g01632 891 SUPERFAMILY Calcium ATPase, transduction domain A 346 436 IPR008250 -
Vivi3g01632 891 FunFam Copper-transporting ATPase 1, putative 309 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01632 Vivi-Chr3 26556341 26566649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01632 248 878 Primary Pumps ATPases AT1G63440 37.054 2.54e-116 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01632 K17686 - gmx:100127402 1394.79