Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01631 ATGTCTCGCCCAATTGAGCCATTGAAAGAGATCAATGATTCAAAAGATTTGTGGAAGATCGCTGTTAGGTGCAAACATCTGTGGACTGTCACAAGTTCTTCAAACAAAGAACACATGGAGATGGTTTTGGTTGATTCTAAGCGTGATATGATTCAGGCTGTTGTGCCTGCTTATTTGCTTTCGAAATTCAAATCTGAAATTGAAACAGGAAACTCTTATATCATGCAAAATTTTAAAGTTGGGAAGAATGATTTTGCTTTTAAGACGACAAATCATACATACAAATTGGTTTTTTGTGGGTCAACTTCTGTTAAGAAAGCAGAATTTCCTGATATCCCTCATAACTACCTTAACATTATTGGTTTGAATTCCATAGTTGAAGGAAGGTTTCAATCAAATTTGTTGGTTGATTTGATTGGAGGAATCACTGATATCACTCAAACCCAAGTTAACGGTGACAACAGCAAGAACAGAATAGTTTTTTCTATTGTAGATGCCAGTAAAACAGTTGTACAATGTACTCTTTGGGGGCAACTTGCAGTTCAGCTATATGAGTATTATAAGAATAATAAGCAAGCCTCTGATATTGTCATTGTGCTAATCAATGCAAGGGTTAAAGAGGCTCAAGGAGGATTTCCAATTAGTGTTTCCAACACATGGAATGGAACGAAACTGTTGATTAATGACCCTGCTATTGAGGAAGTCAATAATCTAAAAGAAAGACTTGGTGTTGATTTGCCTTTGTTATCATCTTCAAGTGTACAAGTTGAGGCAACGCAAAACTCATTTTATTCTGACTATGACAAGTTTGTTTGGAAGGCTGAAATAATGAGTCTCTCTGAAATTACAAATCTGCAACATGAAACAACCTGTGTTACCGTTGCTACCCTCGATAAGTTTGATGTTGGGCAGATTGGATGGTACTATGATGGATGTGTGGAATGCACAAGAAGTGTGACTGCCAAGGATGGAAAGCTGAAGTGTTTTAAAGAGCATATTAGCCCAGAACCTGTGCCACGGTATAAGCTTAATATAATGGCTGTTGACGGCAGTTCGAAGGCAAAGTTCGTCTTTTGGGACACGGACTGCGTGAAGTTGATTGGGAAGTCTGCTCTTCAAATGAAGATGGATTTAACTCAGTCTGGTGATTACGATCCACTTGAATTCCCTTACGAACTTGACTCAATATTGGCAAAAGAATTGGCAATTAGAGTTGTTTATCAGCCTAAAAATGGGAGACTTTCTGTCATTGGCTTTAAGACTGATGAAGATACCTCAAAGATTCGAGCACCAGAACCTCTGTCCCAGGATGATATGAATCGCATTTCTGAACCTGTATCTGCATCTGCAGAAAATGACCTGACCATTGAAAATTCAGGGCTCACTCCATGTAAGAGACTTATAAATGATGCAATAGAGGATAATGATAGTGTTCAACAATCATCAACCAAGCTGGCCAGAGATATTAAAAAGGAGAAATAG 1482 0.3812 MSRPIEPLKEINDSKDLWKIAVRCKHLWTVTSSSNKEHMEMVLVDSKRDMIQAVVPAYLLSKFKSEIETGNSYIMQNFKVGKNDFAFKTTNHTYKLVFCGSTSVKKAEFPDIPHNYLNIIGLNSIVEGRFQSNLLVDLIGGITDITQTQVNGDNSKNRIVFSIVDASKTVVQCTLWGQLAVQLYEYYKNNKQASDIVIVLINARVKEAQGGFPISVSNTWNGTKLLINDPAIEEVNNLKERLGVDLPLLSSSSVQVEATQNSFYSDYDKFVWKAEIMSLSEITNLQHETTCVTVATLDKFDVGQIGWYYDGCVECTRSVTAKDGKLKCFKEHISPEPVPRYKLNIMAVDGSSKAKFVFWDTDCVKLIGKSALQMKMDLTQSGDYDPLEFPYELDSILAKELAIRVVYQPKNGRLSVIGFKTDEDTSKIRAPEPLSQDDMNRISEPVSASAENDLTIENSGLTPCKRLINDAIEDNDSVQQSSTKLARDIKKEK 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01631 493 SUPERFAMILY Nucleic acid-binding proteins 275 408 IPR012340 -
Vivi3g01631 493 PANTHER OS03G0429900 PROTEIN 10 409 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi3g01631 493 Gene3D - 2 107 IPR012340 -
Vivi3g01631 493 SUPERFAMILY Nucleic acid-binding proteins 118 249 IPR012340 -
Vivi3g01631 493 Gene3D - 267 425 IPR012340 -
Vivi3g01631 493 CDD RPA1_DBD_B_like 137 242 - -
Vivi3g01631 493 Gene3D - 110 244 IPR012340 -
Vivi3g01631 493 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Vivi3g01631 493 CDD RPA1_DBD_A_like 19 104 - -
Vivi3g01631 493 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01631 Vivi-Chr3 26543796 26546151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01631 1 371 Core DNA Replication Machinery Family AT5G08020 22.646 6.16e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01631 - - vvo:131614721 835.484