LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g01618	ATGAAGGGAATTTTAGTAAAAGAAGAAGAAACACTAGCATATACAAATGCTGGTTCATCAACAAGTTCATCTTCCTCCTCCAATTCAAATCTTCAACCAAAACCAATGGAAGGGTTACACGAAACAGGTCCGCCTCCATTTCTCACCAAAACCTTTGATGTCGTTGAAGATCCTTCCACCGATGGAATCGTTTCGTGGAGCAGAGCTCGTAATAGCTTCGTCGTTTGGGATTTGAATAAATTCTCCACTGCGATTTTGCCTCGGTACTTCAAACATAGCAATTTCTCTAGCTTCGTTCGTCAACTCAATACCTATGGATTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAATGAAGGTTTTTTAGCTGGACAGAGGAACTTGTTGAAAACGATCAAGAGAAGAAGAAATGTAGCACAATCGCCATCTATGCAGCGAGAAAGCGGCGGTGCTTGTATAGAATTAGGAGAGTTTGGTCTTGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGATCTGTTTTAGTGGCTGAAATTGTGAAACTGAGACAGCAGCAGAATAATTCAAGGGATCAGTTATCTGCTATGGAAGCTAGGCTGTTGGTTACTGAGAAGAAACATCAACAGATGATGGCTTTTCTTGCAAAAGCACTTAGTAGTCAATCTTTTATTCAGCAATTGGCGAATAAGAAAGAGTTGAAAGGTGTTGAAATGAAGCGGAAGAGGAGGCTCACTGCTAGTTCAAGTTTGGAGATTTTGCAGAAGGATTCCGTGACGATGATGACAGTGCCGATTGAATCTGTGGTGGATTATTCTAGTCAAGAACAACAAGAGGGCTTGACTGCTATAGAGTCTGAGATAGAGACATTGTTAAGTGCTTATGATAATGAGTCGAAGAGTGAAATCAAAGACTATGCATCATTGAGTTCAGTTCCGAGTGCTAATGAGAGTAATTTGGGTGATTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAGGATGAAGTTTTGATTGGTGAGTTCTCACAAATTGATGCACCGGTTGAGGATTTGGTAGAAAAGAATGGTGATTGGACTGTGGATTTGCAGAACCTCGTTGATCAAATGGATTTTGAACCTTAA	1131	0.412	MKGILVKEEETLAYTNAGSSTSSSSSSNSNLQPKPMEGLHETGPPPFLTKTFDVVEDPSTDGIVSWSRARNSFVVWDLNKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVAQSPSMQRESGGACIELGEFGLEGEIERLRRDRSVLVAEIVKLRQQQNNSRDQLSAMEARLLVTEKKHQQMMAFLAKALSSQSFIQQLANKKELKGVEMKRKRRLTASSSLEILQKDSVTMMTVPIESVVDYSSQEQQEGLTAIESEIETLLSAYDNESKSEIKDYASLSSVPSANESNLGDWEDLLNQELVGGNPEDEVLIGEFSQIDAPVEDLVEKNGDWTVDLQNLVDQMDFEP	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g01618	376	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	33	273	IPR027725	-
	Vivi3g01618	376	MobiDBLite	consensus disorder prediction	13	43	-	-
	Vivi3g01618	376	PRINTS	Heat shock factor (HSF) domain signature	85	97	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi3g01618	376	PRINTS	Heat shock factor (HSF) domain signature	98	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi3g01618	376	PRINTS	Heat shock factor (HSF) domain signature	47	70	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi3g01618	376	Coils	Coil	165	199	-	-
	Vivi3g01618	376	ProSitePatterns	HSF-type DNA-binding domain signature.	86	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi3g01618	376	MobiDBLite	consensus disorder prediction	13	35	-	-
	Vivi3g01618	376	Pfam	HSF-type DNA-binding	47	136	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi3g01618	376	SMART	hsfneu3	43	136	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vivi3g01618	376	SUPERFAMILY	"Winged helix" DNA-binding domain	43	136	IPR036390	-
	Vivi3g01618	376	FunFam	Heat shock transcription factor 1	40	137	-	-
	Vivi3g01618	376	Gene3D	-	39	137	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g01618	Vivi-Chr3	26410105	26412695	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g01618	33	374	HSF	AT2G26150	51.585	1.30e-118	346

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vivi3g01618		HSF_DNA-bind	2.2e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g01618	K09419		-	gmx:100794605	445.662