Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01616 ATGGGTGCTTCTGGAAAATGGGTGAAAGCATTAATCGGACTCAAAAAACACGACAAAGATGAACATGTGAAGGAGGGTGTGAAGAGTAAGAAATGGAGGTTATGGAGAAGTTCTTCCGGTGATAACGGTTCTTGGAAAGGCTTTAAAGGTAACAACTCTCACAAAGCAGTTTCTGAAGGCTCTGAATCTCCAACTGCTGCAGAAGCTTACACTGCCGCAGTAGCCACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTCGTTAGGCAAGAATGGGCTGCTATAAGAATCCAAACAACTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCACTAGTTAGGGGTAGGCAAGTGAGGAAGCAAGCTGCGGTGACATTGAGGTGCATGCAGGCGTTGGTTCGTGTTCAGGCTCGAGTGAGGGCTCGTCGAGTGAGGATGTCGATGGAGGGACAAGCTGTGCAGAATATGCTCAATGAGCGGCGGACAAAGCTTGAACTTTTGAAGGATGCTGAGGAAGGGTGGTGTGATAGTATAGGAACATTGGAAGATGTGAAATCGAAGATTCAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAAAGAGCACTTGCATACTCTCTTGCTCAAAAGCAATGCAGGCCAACTTCAAGCACTTATTCACAATCCGCCGCCTCGTTTTCCTCTCTCAAGAATCCAGAAATGAACAAAGCTAATGGAGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACAAGATTGATGGAACAATCCCATGCTGAAAGCTTATTAGATAAAACGCCTCCACCACCGCCGAAGAAATTTGTGGAACCCTTTGTAAGCTCTAATTCAAAACCATGCTCAGTCAATATTAAGAGGAACAATGTTACAACAAGGATTTCTGCTAAGCCTCCTCCCCACATCGGACAGGCTACTCGTTCGTCCTCTAGTCCAAGTTCCGAGTTTCGGTATGACGAGAGTTCTGCATCATCTTCTATTTGTACATCCGCAACACCAATGTCAGGGAACACTTATGAAAGGACTGAGGATAGTAACAGCAACTCTAGGCCAAATTACATGAACCTAACGCAATCAACCAAGGCGAAGCTAAAATCAGGTAATAATCCAATGTATAACCGAGCTCAAAGGCAACAGTCAATGGACGAGTTTCAGTTTATGAGGAGGGCTGCAGGTTTCTCTAATGGAGATTCTAGAAGTATTGCTGCTTCTGACCATTCACTCAACTTTTCTAGGCCACTTCACCTATCAACTCACATGGATAAAAGCTCCGTGAGGCCACGGTGA 1341 0.4579 MGASGKWVKALIGLKKHDKDEHVKEGVKSKKWRLWRSSSGDNGSWKGFKGNNSHKAVSEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKLELLKDAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQCRPTSSTYSQSAASFSSLKNPEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLLDKTPPPPPKKFVEPFVSSNSKPCSVNIKRNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSATPMSGNTYERTEDSNSNSRPNYMNLTQSTKAKLKSGNNPMYNRAQRQQSMDEFQFMRRAAGFSNGDSRSIAASDHSLNFSRPLHLSTHMDKSSVRPR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01616 446 SMART iq_5 112 133 IPR000048 GO:0005515
Vivi3g01616 446 SMART iq_5 89 111 IPR000048 GO:0005515
Vivi3g01616 446 MobiDBLite consensus disorder prediction 43 62 - -
Vivi3g01616 446 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Vivi3g01616 446 PANTHER IQ-DOMAIN 5-RELATED 1 415 - -
Vivi3g01616 446 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Vivi3g01616 446 MobiDBLite consensus disorder prediction 271 372 - -
Vivi3g01616 446 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Vivi3g01616 446 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Vivi3g01616 446 Gene3D - 88 139 - -
Vivi3g01616 446 MobiDBLite consensus disorder prediction 320 372 - -
Vivi3g01616 446 MobiDBLite consensus disorder prediction 293 313 - -
Vivi3g01616 446 MobiDBLite consensus disorder prediction 43 60 - -
Vivi3g01616 446 MobiDBLite consensus disorder prediction 426 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01616 Vivi-Chr3 26394991 26397205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01616 1 440 IQD Protein Family AT2G26180 59.594 1.48e-147 425