Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01615 ATGGGTGCTTCTGGAAAATGGGTGAAAGCATTAATCGGACTCAAAAAACACGACAAAGATGAACATGTGAAGGAGGGTGTGAAGAGTAAGAAATGGAGGTTATGGAGAAGTTCTTCCGGTGATAACGGTTCTTGGAAAGGCTTTAAAGGTAACAACTCTCACAAAGCAGTTTCTGAAGGCTCTGAATCTCCAACTGCTGCAGAAGCTTACACTGCCGCAGTAGCCACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTCGTTAGGCAAGAATGGGCTGCTATAAGAATCCAAACAACTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCTTTGAAGGCGGTGGTGAGGATTCAAGCACTAGTTAGGGGTAGGCAAGTGAGGAAGCAAGCTGCGGTGACATTGAGGTGCATGCAGGCGTTGGTTCGTGTTCAGGCTCGAGTGAGGGCTCGTCGAGTGAGGATGTCGATGGAGGGACAAGCTGTGCAGAATATGCTCAATGAGCGGCGGACAAAGCTTGAACTTTTGAAGGATGCTGAGGAAGGGTGGTGTGATAGTATAGGAACATTGGAAGATGTGAAATCGAAGATTCAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAAAGAGCACTTGCATACTCTCTTGCTCAAAAGCAGCAATGCAGGCCAACTTCAAGCACTTATTCACAATCCGCCGCCTCGTTTTCCTCTCTCAAGAATCCAGAAATGAACAAAGCTAATGGAGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACAAGATTGATGGAACAATCCCATGCTGAAAGCTTATTAGATAAAACGCCTCCACCACCGCCGAAGAAATTTGTGGAACCCTTTGTAAGCTCTAATTCAAAACCATGCTCAGTCAATATTAAGAGGAACAATGTTACAACAAGGATTTCTGCTAAGCCTCCTCCCCACATCGGACAGGCTACTCGTTCGTCCTCTAGTCCAAGTTCCGAGTTTCGGTATGACGAGAGTTCTGCATCATCTTCTATTTGTACATCCGCAACACCAATGTCAGGGAACACTTATGAAAGGACTGAGGATAGTAACAGCAACTCTAGGCCAAATTACATGAACCTAACGCAATCAACCAAGGCGAAGCTAAAATCAGGTAATAATCCAATGTATAACCGAGCTCAAAGGCAACAGTCAATGGACGAGTTTCAGTTTATGAGGAGGGCTGCAGGTTTCTCTAATGGAGATTCTAGAAGTATTGCTGCTTCTGACCATTCACTCAACTTTTCTAGGCCACTTCACCTATCAACTCACATGGATAAAAGCTCCGTGAGGCCACGGTGA 1344 0.4583 MGASGKWVKALIGLKKHDKDEHVKEGVKSKKWRLWRSSSGDNGSWKGFKGNNSHKAVSEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKLELLKDAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQQCRPTSSTYSQSAASFSSLKNPEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLLDKTPPPPPKKFVEPFVSSNSKPCSVNIKRNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSATPMSGNTYERTEDSNSNSRPNYMNLTQSTKAKLKSGNNPMYNRAQRQQSMDEFQFMRRAAGFSNGDSRSIAASDHSLNFSRPLHLSTHMDKSSVRPR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01615 447 MobiDBLite consensus disorder prediction 321 373 - -
Vivi3g01615 447 PANTHER IQ-DOMAIN 5-RELATED 1 416 - -
Vivi3g01615 447 SMART iq_5 112 133 IPR000048 GO:0005515
Vivi3g01615 447 SMART iq_5 89 111 IPR000048 GO:0005515
Vivi3g01615 447 MobiDBLite consensus disorder prediction 43 62 - -
Vivi3g01615 447 Gene3D - 87 141 - -
Vivi3g01615 447 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Vivi3g01615 447 MobiDBLite consensus disorder prediction 427 447 - -
Vivi3g01615 447 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Vivi3g01615 447 MobiDBLite consensus disorder prediction 306 373 - -
Vivi3g01615 447 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Vivi3g01615 447 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Vivi3g01615 447 MobiDBLite consensus disorder prediction 43 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01615 Vivi-Chr3 26394991 26397207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01615 1 441 IQD Protein Family AT2G26180 59.459 8.28e-146 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01615 - - gmx:100799714 605.52