Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01612 ATGTTAAACACAAAAATTTACCTAACCGTAGAGGGCACTAATGTTTTTCCGCCCGATGAAGATGATGTATCGCACATTTTCAATAATTTACGTGCAATGTGTCAACGCAAAGCTATCACCATGAAAGAAGCCGTAATCGATCATCATGATGTTGTGAAAGGACTATTAGATTTCGCTAATAGAAATGTCATACATAGTATTGTTGTTGGTGCATCAACAAAGAATCATATGCCAAGTATAAAAAAATTTAAAGCAAATAATGATATACCAACAAACATGATTAAATTAGCACCGGATTATTGCTCTGTATACATCATTTCAAAGTTGAAGATTGTGTCGGCTCGGTCAGCGGTAAGATCGATGGGAGGAAACCAGACTATTCCGACGAAAATTCTACCGGTTCAATCATCCTCCCCATATGGTGGTGAATTTGCAGGTGGAATGAGGTCAATACTACCTAGAACTGGTAACACTTATGAAGGATCTTCAGAATCAAGGTCTTTTGATAGTGTTACTACGGGAAAAGGATCGACGCGTGAGAGACCAAGGAGTGCAGGAAGTAATATGTCAATGGACAGTATTGATGTACCAAGTAGTCGTGGACGAAGTTGGGCATCGATGGATGAAAGAGACATGGCAGCGCTTGGGCCGATTGTTGAATCAAACGGATCTGATATGGATCTAATAGATTCTTTCGGGACACAAGCGACTTCTCATACCTCAAAAGAGCTTGAAGCTGAGATGAAAAGATTGAGGCTTGAATTGAAGCAAACTATGGACATGTATAGCTCGGCTTGCAAGCAAGCAATCTCGGCAAAAAATCAGGCAGACCAAATTCGTCGATGGAGAGTAGAAGAGGAAAAAAAGGTTGTGGAAGTTAGGTTATCTCAAGAGGCAGCTCTTGCGATGGCAGAAAGGGAGAAGGCTAGAGCAAAAGTTGCATTAGAAGCAGCTGAGGAAGCCAAGTGGAAGGCTGAACAAGAGGCACAGAGAAGAAGGGAGGCAGAGATGAAGGCGATGAAAGAGGCAGCAGAGAGGGATCGAGTATTAACCGCATTGGCTCAAAATGATAATCGATATCGAAAATACACAATGCAGGAGATTGAAGTTGCTACCGATAGATTCTCCCCGTCAAGAAAAATAGGTGAAGGTGGATATGGACCGGTGTTTAAAGGTCACCTTGATCACACCGCAGTTGCAATCAAACTTTTAAATCCCGAAGCTTCTCAAGGCCGGAAGCAATTCCAACAAGAGGTTGAGGTACTAAGCAGTATTCGACATCCGAATATGGTTCTCCTCCTCGGTGCATGTCCTGAGCATGGTTGTTTGGTGTATGAATACATGGATAACGGTAGCTTAGAAGATAGATTATTTCGAAAAAACAAAAGCAAGCCTCTATCATGGCAAAAAAGGTTCCAAATAGCAGCTGAGATTTCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCGGAGCCAATCGTGCATCGAGACCTTAAACCATCAAACATTCTGTTGGACAGAAATTACGTGAGTAAAATAAGCGATGTCGGTCTCGCAAGATTAGTCCCTCCTTCTGTAGCTGACAGTGTCACACAATATTACATGACTTCAGCTGCTGGAACGTTTTGCTATATCGACCCCGAGTATCAACAAACAGGAATATTAACCACAAGGTCCGACGTTTACTCGTTGGGGATAATGCTACTGCAGATAATCACAGCAAGGCCGCCCATGGGACTTACTCACCAAGTTAAAAAAGCGATCGAAAAGGATTGTTTCAAGCAGATTCTTGATCCTGCGGTGACCGATTGGCCAGTTGAAGAGGCTCTATCATTTGCTAAAATAGCATTAGGTTGTGCAGAACTCTGCAAGAAAGATAGGCCAAGTCTTGCAACAGTTGTATTACCAGAGATTAATAGGTTAAGAGACCTTGGAGACACTGATAATCAAGTTTTTATTGATACTAAGATTCATGGCCATTCGCAACGTCCTCCTATGCCTACCTGA 2007 0.423 MLNTKIYLTVEGTNVFPPDEDDVSHIFNNLRAMCQRKAITMKEAVIDHHDVVKGLLDFANRNVIHSIVVGASTKNHMPSIKKFKANNDIPTNMIKLAPDYCSVYIISKLKIVSARSAVRSMGGNQTIPTKILPVQSSSPYGGEFAGGMRSILPRTGNTYEGSSESRSFDSVTTGKGSTRERPRSAGSNMSMDSIDVPSSRGRSWASMDERDMAALGPIVESNGSDMDLIDSFGTQATSHTSKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQADQIRRWRVEEEKKVVEVRLSQEAALAMAEREKARAKVALEAAEEAKWKAEQEAQRRREAEMKAMKEAAERDRVLTALAQNDNRYRKYTMQEIEVATDRFSPSRKIGEGGYGPVFKGHLDHTAVAIKLLNPEASQGRKQFQQEVEVLSSIRHPNMVLLLGACPEHGCLVYEYMDNGSLEDRLFRKNKSKPLSWQKRFQIAAEISTALLFLHQTKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVADSVTQYYMTSAAGTFCYIDPEYQQTGILTTRSDVYSLGIMLLQIITARPPMGLTHQVKKAIEKDCFKQILDPAVTDWPVEEALSFAKIALGCAELCKKDRPSLATVVLPEINRLRDLGDTDNQVFIDTKIHGHSQRPPMPT 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01612 668 Pfam Protein kinase domain 377 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01612 668 Coils Coil 301 346 - -
Vivi3g01612 668 FunFam U-box domain-containing protein 51 448 648 - -
Vivi3g01612 668 Gene3D Phosphorylase Kinase; domain 1 347 447 - -
Vivi3g01612 668 PANTHER OS02G0152300 PROTEIN 20 648 - -
Vivi3g01612 668 SUPERFAMILY Protein kinase-like (PK-like) 359 634 IPR011009 -
Vivi3g01612 668 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 347 447 - -
Vivi3g01612 668 MobiDBLite consensus disorder prediction 155 200 - -
Vivi3g01612 668 Gene3D Transferase(Phosphotransferase) domain 1 448 656 - -
Vivi3g01612 668 SMART serkin_6 375 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01612 668 CDD STKc_IRAK 381 634 - -
Vivi3g01612 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Vivi3g01612 668 MobiDBLite consensus disorder prediction 145 204 - -
Vivi3g01612 668 ProSiteProfiles Protein kinase domain profile. 375 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01612 668 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01612 Vivi-Chr3 26276224 26279271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01612 41 650 Receptor kinase-like Gene Family AT5G12000 55.063 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi3g01612 Pkinase 5.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01612 - - psat:127087910 1079.32