Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01611 ATGTCTCTCCCACCGCCAACCGGTCCCCCACAACAAAACACAATGGTGGCCGTTGACAAAGACAAGAACAGTGCTTACGCTTTTCGTTGGGCAGTCAATCATCTCGACAATCCTGTCATCATTGCTGTCCATGTTAAACACAAAAATTTACCTAACCAGGGCACTAATGTTTTTCCGCCCGATGAAGATGATGTATCGCACATTTTCAATAATTTACGTGCAATGTGTCAACGCAAAGCTATCACCATGAAAGAAGCCGTAATCGATCATCATGATGTTGTGAAAGGACTATTAGATTTCGCTAATAGAAATGTCATACATAGTATTGTTGTTGGTGCATCAACAAAGAATCATATGCCAAGTATAAAAAAATTTAAAGCAAATAATGATATACCAACAAACATGATTAAATTAGCACCGGATTATTGCTCTGTATACATCATTTCAAAGTTGAAGATTGTGTCGGCTCGGTCAGCGGTAAGATCGATGGGAGGAAACCAGACTATTCCGACGAAAATTCTACCGGTTCAATCATCCTCCCCATATGGTGGTGAATTTGCAGGTGGAATGAGGTCAATACTACCTAGAACTGGTAACACTTATGAAGGATCTTCAGAATCAAGGTCTTTTGATAGTGTTACTACGGGAAAAGGATCGACGCGTGAGAGACCAAGGAGTGCAGGAAGTAATATGTCAATGGACAGTATTGATGTACCAAGTAGTCGTGGACGAAGTTGGGCATCGATGGATGAAAGAGACATGGCAGCGCTTGGGCCGATTGTTGAATCAAACGGATCTGATATGGATCTAATAGATTCTTTCGGGACACAAGCGACTTCTCATACCTCAAAAGAGCTTGAAGCTGAGATGAAAAGATTGAGGCTTGAATTGAAGCAAACTATGGACATGTATAGCTCGGCTTGCAAGCAAGCAATCTCGGCAAAAAATCAGGCAGACCAAATTCGTCGATGGAGAGTAGAAGAGGAAAAAAAGGTTGTGGAAGTTAGGTTATCTCAAGAGGCAGCTCTTGCGATGGCAGAAAGGGAGAAGGCTAGAGCAAAAGTTGCATTAGAAGCAGCTGAGGAAGCCAAGTGGAAGGCTGAACAAGAGGCACAGAGAAGAAGGGAGGCAGAGATGAAGGCGATGAAAGAGGCAGCAGAGAGGGATCGAGTATTAACCGCATTGGCTCAAAATGATAATCGATATCGAAAATACACAATGCAGGAGATTGAAGTTGCTACCGATAGATTCTCCCCGTCAAGAAAAATAGGTGAAGGTGGATATGGACCGGTGTTTAAAGGTCACCTTGATCACACCGCAGTTGCAATCAAACTTTTAAATCCCGAAGCTTCTCAAGGCCGGAAGCAATTCCAACAAGAGGTTGAGGTACTAAGCAGTATTCGACATCCGAATATGGTTCTCCTCCTCGGTGCATGTCCTGAGCATGGTTGTTTGGTGTATGAATACATGGATAACGGTAGCTTAGAAGATAGATTATTTCGAAAAAACAAAAGCAAGCCTCTATCATGGCAAAAAAGGTTCCAAATAGCAGCTGAGATTTCAACTGCACTCCTTTTCCTTCACCAAACAAAGCCGGAGCCAATCGTGCATCGAGACCTTAAACCATCAAACATTCTGTTGGACAGAAATTACGTGAGTAAAATAAGCGATGTCGGTCTCGCAAGATTAGTCCCTCCTTCTGTAGCTGACAGTGTCACACAATATTACATGACTTCAGCTGCTGGAACGTTTTGCTATATCGACCCCGAGTATCAACAAACAGGAATATTAACCACAAGGTCCGACGTTTACTCGTTGGGGATAATGCTACTGCAGATAATCACAGCAAGGCCGCCCATGGGACTTACTCACCAAGTTAAAAAAGCGATCGAAAAGGATTGTTTCAAGCAGATTCTTGATCCTGCGGTGACCGATTGGCCAGTTGAAGAGGCTCTATCATTTGCTAAAATAGCATTAGGTTGTGCAGAACTCTGCAAGAAAGATAGGCCAAGTCTTGCAACAGTTGTATTACCAGAGATTAATAGGTTAAGAGACCTTGGAGACACTGATAATCAAGTTTTTATTGATACTAAGATTCATGGCCATTCGCAACGTCCTCCTATGCCTACCTGA 2133 0.428 MSLPPPTGPPQQNTMVAVDKDKNSAYAFRWAVNHLDNPVIIAVHVKHKNLPNQGTNVFPPDEDDVSHIFNNLRAMCQRKAITMKEAVIDHHDVVKGLLDFANRNVIHSIVVGASTKNHMPSIKKFKANNDIPTNMIKLAPDYCSVYIISKLKIVSARSAVRSMGGNQTIPTKILPVQSSSPYGGEFAGGMRSILPRTGNTYEGSSESRSFDSVTTGKGSTRERPRSAGSNMSMDSIDVPSSRGRSWASMDERDMAALGPIVESNGSDMDLIDSFGTQATSHTSKELEAEMKRLRLELKQTMDMYSSACKQAISAKNQADQIRRWRVEEEKKVVEVRLSQEAALAMAEREKARAKVALEAAEEAKWKAEQEAQRRREAEMKAMKEAAERDRVLTALAQNDNRYRKYTMQEIEVATDRFSPSRKIGEGGYGPVFKGHLDHTAVAIKLLNPEASQGRKQFQQEVEVLSSIRHPNMVLLLGACPEHGCLVYEYMDNGSLEDRLFRKNKSKPLSWQKRFQIAAEISTALLFLHQTKPEPIVHRDLKPSNILLDRNYVSKISDVGLARLVPPSVADSVTQYYMTSAAGTFCYIDPEYQQTGILTTRSDVYSLGIMLLQIITARPPMGLTHQVKKAIEKDCFKQILDPAVTDWPVEEALSFAKIALGCAELCKKDRPSLATVVLPEINRLRDLGDTDNQVFIDTKIHGHSQRPPMPT 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01611 710 MobiDBLite consensus disorder prediction 187 246 - -
Vivi3g01611 710 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 117 - -
Vivi3g01611 710 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 389 489 - -
Vivi3g01611 710 Pfam Protein kinase domain 419 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01611 710 SMART serkin_6 417 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01611 710 Coils Coil 343 388 - -
Vivi3g01611 710 Gene3D Phosphorylase Kinase; domain 1 389 489 - -
Vivi3g01611 710 Gene3D HUPs 7 122 IPR014729 -
Vivi3g01611 710 FunFam U-box domain-containing protein 51 490 690 - -
Vivi3g01611 710 CDD STK_N 16 150 - -
Vivi3g01611 710 MobiDBLite consensus disorder prediction 197 242 - -
Vivi3g01611 710 SUPERFAMILY Protein kinase-like (PK-like) 401 676 IPR011009 -
Vivi3g01611 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Vivi3g01611 710 PANTHER OS02G0152300 PROTEIN 15 690 - -
Vivi3g01611 710 Gene3D Transferase(Phosphotransferase) domain 1 490 697 - -
Vivi3g01611 710 Coils Coil 283 303 - -
Vivi3g01611 710 CDD STKc_IRAK 423 676 - -
Vivi3g01611 710 Pfam Universal stress protein family 13 118 IPR006016 -
Vivi3g01611 710 ProSiteProfiles Protein kinase domain profile. 417 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01611 Vivi-Chr3 26276125 26279271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01611 83 692 Receptor kinase-like Gene Family AT5G12000 55.063 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi3g01611 Pkinase 6.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01611 - - psat:127087910 1158.67