Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01608 ATGGAAGAAATGTCGGTTGCTGTGCCGTTAAGAGCAAGTAATTCAGTTTGTGATAATTCAACCATAGCTAACCATATGGATGTTTCGAGACTTAAGTTGATGGCAAATGCAGAGTTGATATCGAATGCTATAACTACGATATCTGCTGATAGTTTTATAGGTTCTGAGGAGGATCGTATTGGTGACAATATGGACAATGAGGTTGGTGTTTCGGCAGTCGCAACACCTTTGCATGGGAGAGAAAGGGAAATTCTTGTGTTGAATATGATATCTCAAGGTAGCGATGAACTTCTAGTTCCAGAAGTTGATGAGGATGATTCGATGTCATTAGAAGGAGATCCGATTATTTACAGCACTCTATCAATAGCCAGTGAGAATAGTAGTGTTTGTGGAGATGAGTTCTTCAGCTCGGAAGATAACTCAGATTTTAGGACAAGGAGTTCGATGGACTCGATGGACATAGATAAGAACATCTCTTCTGTTGAAGTTGTTGCTCGGGCTGCTGTTTTTGACGATTCAAATGCGGAGGCAGATATCATGACTGAACCCCTTGCTGTAGCATCGAGCCTTGGAGACGAAACTGGAGTTAGATCCGTCCCAATGCCTACTACAGCTGTTCTTCATCAACTACCTCTTGAAAAAGGGGTGAGTGGAACAGTCGGTCGGAGTGTTTTTGAATTGGACTGTACCCCACTTTGGGGATTTACATCAGTGTGTGGAAAAAGACCTGAGATGGAAGATGCCGTTGCGGTTGTACCTCGGATGTTGAAAATTCCTATTCAAATGCTAAATGGTAACAAGAGATATGAAGGAATTAACAAGGATTTTAATCAGCAGACAGTTCATTTCTTTGGAGTATATGATGGCCACGGTGGCTTGCAGGTGGCAAATTATTGTCGTGATCGTATGCATTTGGCTTTAGCTGAGGAAGTAGAATTGTTCAAAGAAAGTCTAATAATTGGAAGTCCCAAGGATGATTGTCAAGACTTATGGAAAAAAGCTTTCACTAATTGTTTTTTGAAGGTTGATAATGAAGTTGGGGGGAAAGTTAATTGTGAACCTGTTGCACCAGAAACTGTTGGTTCCACTGCTGTTGTAGCCATTGTTTGTTCTTCCCATATTATAGTTTCTAACTGTGGTGATTCCAGAGCGGTTTTGTGCCGTGGAAAAGAACCCATGGCTTTATCTGTGGATCATAAACCAAATCGAGATGATGAATATGCAAGAATCGAGGCAGCTGGTGGCAAGGTGATACAATGGAATGGTCATCGTGTATTTGGAGTTCTTGCAATGTCAAGGTCTATCGGTGATAGATATTTGAAGCCATGGATTATTCCTGAACCAGAAGTTACATTCCTCCCTCGTGCAAAAGACGATGAATGTCTCATTTTGGCCAGTGATGGCTTGTGGGATGTCATGACGAATGAAGAGGCATGCGATTTAGCTCGAAGACGCATACTTCTCTGGCATAAGAAAAATGGCTCAGAGCTGTCCTCAGTAAGGGGAGAAGGAATCGATCCTGCTGCACAGGCGGCTGCAGAATACCTATCAAACCGTGCTTCGCAAAAAGGAAGCAAAGATAACATCACTGTCATCGTGGTAGATTTGAAAGCTCAACGGAAATTTAAGAGTAAAACATGA 1641 0.4205 MEEMSVAVPLRASNSVCDNSTIANHMDVSRLKLMANAELISNAITTISADSFIGSEEDRIGDNMDNEVGVSAVATPLHGREREILVLNMISQGSDELLVPEVDEDDSMSLEGDPIIYSTLSIASENSSVCGDEFFSSEDNSDFRTRSSMDSMDIDKNISSVEVVARAAVFDDSNAEADIMTEPLAVASSLGDETGVRSVPMPTTAVLHQLPLEKGVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDAVAVVPRMLKIPIQMLNGNKRYEGINKDFNQQTVHFFGVYDGHGGLQVANYCRDRMHLALAEEVELFKESLIIGSPKDDCQDLWKKAFTNCFLKVDNEVGGKVNCEPVAPETVGSTAVVAIVCSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFLPRAKDDECLILASDGLWDVMTNEEACDLARRRILLWHKKNGSELSSVRGEGIDPAAQAAAEYLSNRASQKGSKDNITVIVVDLKAQRKFKSKT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01608 546 PANTHER PROTEIN PHOSPHATASE 180 536 IPR015655 GO:0004722|GO:0006470
Vivi3g01608 546 Pfam Protein phosphatase 2C 260 529 IPR001932 -
Vivi3g01608 546 Gene3D - 219 546 IPR036457 -
Vivi3g01608 546 FunFam Protein phosphatase 2C 16 220 546 - -
Vivi3g01608 546 SUPERFAMILY PP2C-like 228 537 IPR036457 -
Vivi3g01608 546 CDD PP2Cc 234 536 IPR001932 -
Vivi3g01608 546 ProSiteProfiles PPM-type phosphatase domain profile. 232 536 IPR001932 -
Vivi3g01608 546 ProSitePatterns PPM-type phosphatase domain signature. 283 291 IPR000222 GO:0043169
Vivi3g01608 546 SMART PP2C_4 222 534 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01608 Vivi-Chr3 26225070 26228247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01608 1 546 PP2C-type Phosphatase Gene Family AT1G17550 49.107 2.89e-162 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01608 K14497 - gmx:102662702 795.808