Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01588 ATGAGTTTAACAACAGTAGAAGACGATTCATCTTCCGAAATCCATTTACCTGCAGAAATTGACTGGCACATGCTAGACAAATCGAAGTTTTTCTTCCTCGGCGCCGCCTTATTCTCCGGCGTCTCCGCCGCGCTTTATCCAATGGTGGTTTTGAAAACTCGCCAGCAGGTTTCATCTTCACACTTTTCTTGTATCAACATGTCGTGTGCTATTATGCGGTATGAAGGTTTTAGAGGCTTTTATAAAGGTTTTGGTACTTCTTTGATGGGGACTATCCCTGCTAGAGCACTTTACATGACGGCACTTGAGGTTACAAAGAGTAACGTCGGTACTGCTTTTGTTGATTTGGGGTTTTCTGATAATACTGCTACTGCTGTTGCTAGTGCTGCTGCTGGTGTTACTTCTGCTATGTCTGCGCAGTTGGTTTGGACTCCGATTGATGTTGTTAGTCAGAGACTTATGGTTCAGGGTTGTAGCAGTGGTGGCGGTGGTGGTGGAGGAAAGAGTATTTTGGCGAATCTAAATTCGGAGAATTATAGAAATGGTTTAGATGTGTTTAGAAAAATTCTTTATAATGATGGGCCAAGAGGGTTCTATAGAGGATTTGGGATTTCGATATTGACATATGCGCCATCGAATGCTGTTTGGTGGACTTCTTATTCTATGGTGCATAGGTTCATTTGGGGTAATTTCGGTTCGTGTTTGTGTAAGAGTGGTGGTAATTTGGGTGGTGGTGGTGGTGATGGGTGTGTTGGTTTTAGACCTGATTCTAAGGTAATGGTTGGTGTACAAGGTTTGAGTGCTGTTGTGGCGAGTGGCGTTTCGGCTATTGTGACAATGCCGTTTGATACTATTAAGACTAGGTTGCAGGTTTTGGATACGGAGGAGAATGGGAGAAGGAGGCCGTTAACTTTTGCACAGACGGTTAGGAATTTGGTCAATGAAGGTGGTTTGTTTGCTTGTTATAAAGGATTGGGGCCAAGGTGGGTTTCGATGTCTATGTCTGCTACGACTATGATTACTACTTACGAGTTTTTGAAACGCATGTCTACAAAGAGGCAAGATTAG 1068 0.4335 MSLTTVEDDSSSEIHLPAEIDWHMLDKSKFFFLGAALFSGVSAALYPMVVLKTRQQVSSSHFSCINMSCAIMRYEGFRGFYKGFGTSLMGTIPARALYMTALEVTKSNVGTAFVDLGFSDNTATAVASAAAGVTSAMSAQLVWTPIDVVSQRLMVQGCSSGGGGGGGKSILANLNSENYRNGLDVFRKILYNDGPRGFYRGFGISILTYAPSNAVWWTSYSMVHRFIWGNFGSCLCKSGGNLGGGGGDGCVGFRPDSKVMVGVQGLSAVVASGVSAIVTMPFDTIKTRLQVLDTEENGRRRPLTFAQTVRNLVNEGGLFACYKGLGPRWVSMSMSATTMITTYEFLKRMSTKRQD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01588 355 SUPERFAMILY Mitochondrial carrier 23 346 IPR023395 -
Vivi3g01588 355 Gene3D Mitochondrial carrier domain 29 355 IPR023395 -
Vivi3g01588 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 226 IPR018108 -
Vivi3g01588 355 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 10 354 - -
Vivi3g01588 355 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Vivi3g01588 355 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Vivi3g01588 355 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Vivi3g01588 355 PRINTS Mitochondrial carrier protein signature 268 290 IPR002067 GO:0055085
Vivi3g01588 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 259 349 IPR018108 -
Vivi3g01588 355 Pfam Mitochondrial carrier protein 263 352 IPR018108 -
Vivi3g01588 355 Pfam Mitochondrial carrier protein 124 229 IPR018108 -
Vivi3g01588 355 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Vivi3g01588 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01588 Vivi-Chr3 26044155 26045887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01588 13 355 Chloroplast and Mitochondria Gene Families AT5G26200 65.015 5.94e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01588 K15121 - gmx:100784202 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01588 3 26044155 26045887 Vivi3g01588 3 26044155 26045887 ECH