Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01587 ATGAGTACGAAACGAGAGATAACTTGTGTTCGTGATGGTGAGAGAATGCCTGAATTTCATCTTTCCCTAAGGCCACTCTTAAAAAAACAAACACGTGTTCTCGCTGCCGGTAGGCGCCTCCGTGGGCGTCCTATAGGATCCAAGAACAAGCCAAAGATACTTGGCGTATTAACAGGTGATAACCGCAACACATTCAAATTTCACACAATTAAGATCAACGATGGAGTTGACATAATGAAACGTCTATTTGATTTTTCTAAGCGTCAAAAGAGGGCCATTAGCATAATTACTGGAAATGGAGTGGTGGAGAAAGCCAGATTTCTTCAATCAAATGGAGGAATTACAACTCTTCATGGAACGTTTAATATTCTCTCTATATCTGGGATAATTCTACCAGCGCCCAAACTAGAGAGTGAAGCCAAATTAGCAATTTCCTTATTGTGA 444 0.4054 MSTKREITCVRDGERMPEFHLSLRPLLKKQTRVLAAGRRLRGRPIGSKNKPKILGVLTGDNRNTFKFHTIKINDGVDIMKRLFDFSKRQKRAISIITGNGVVEKARFLQSNGGITTLHGTFNILSISGIILPAPKLESEAKLAISLL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01587 147 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 146 IPR005175 -
Vivi3g01587 147 SUPERFAMILY AF0104/ALDC/Ptd012-like 63 140 - -
Vivi3g01587 147 CDD DUF296 66 134 IPR005175 -
Vivi3g01587 147 Gene3D - 66 147 - -
Vivi3g01587 147 ProSiteProfiles PPC domain profile profile. 62 147 IPR005175 -
Vivi3g01587 147 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 146 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01587 Vivi-Chr3 26036806 26037249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01587 38 131 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 45.745 8.03e-25 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01587 - - vvo:131657746 278.87