Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01577 ATGGATGGTAATAATAAGAATCAAGGTGGTGGTGAAGTAAGCATGATGGAGAAGAAAAGAGAAGTGGTGGTCACAATTTCAAACATCGGTGGAGAGAGTCATGCCCAAGATCATGATCATGGGTTGAAAGTGTTTGAATCTTTGACTGAAAATGAGCCTGCTTCAAAGTCACCACCTATAAAATGTGCTTCTCCTGAGATAAGGTTCAGTCCTAGTCCAAACAAGCCCCCAAAAGCTCCTACTAGAAATGAAAATCTTACCAAAAGAAAATCTTTTGTAAGATCAGTGTATTCTAAACCAAAATCAAGATTTGGTGAACAACCTTATTCGATCGATGGAACGTTTCTGGAAGAGAATGTTTTGCAAGAAGAATTATCTGTTAGTTCACCTTATAGGAACTCGTTTAGTAAGGCATCATATTCACCCAATAACAAATCCGGTTTGGTTAATAGAAGTGTTTCGATTGCTTCTGTCGTCACTCCTAGAACACCTTTGATGCAATCTCCAGGTCCTGCTGGTGAGGATCTAGATGAAATCATTTACAAGAAAGTAGAATTCAGTAGAGGCAAGCATAAGAGACTGACGACGAAGGCTTTGATCGAATTGTTTGTGTTTGTGATGATTGCGGGGAGCTTGATAGCTAGCTTGACTGTTGAGGAACTGAGGAGGACTAAGATTTGGAGTTTGGGGCTTTGGAGATGGTGCATGCTTGTGATGGTGACCTTTTGTGGCATGTTGGTTACAAAATGGTTCATGCACATTGTTGTTTTCTTGATTGAAATGAACTTCTTGTTGAAGAAAAAAGTGCTGTATTTTGTTCATGGAATGAAGAAATGTGTTCAGGTTTTTATTTGGATCGGTTTGGTTCTCCTCACATGGGTGCTTTTGATCAATCATGGCGTCCAGCGATCTAAATTGGCCGAAAAGATTTTGGATGGAGTAACATGGACTCTTGTTTCCCTTCTAATCGGAGCATTTTTATGGGTCATAAAGACATTGTTGCTGAAAATTCTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGATATTCCATCAATATGTTCTGCAAACTCTCTCCGGGCCTCCACTTATCGATGAGACTGAGAAGGTCGGGAGGTCACAGAGTTTGAGCCATTTTAGCTTCAGGAGTATAACCAATAAAGGTGGCTCGAAGAAAGAAGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCGTCGTGGACCATGAAGATTTTGGTGGATTCTGTGATGAATTCAAGGCTGTCAACAATCTCTAATTCACTGGATGAAAGTTTTTATGATGTAGAAAATGAACAAACTGATAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATCATGTTTTCAGAAACGTCGCTGCTTCCCCTAATTGCACGGACATTGACGAAGATGAACTCCGTAGATTCATGATTAAGGAAGAAGTTCCTTTGATATTCCCCCTACTCGCACAGGCAGAGACAGGCCTAATTACCAGAAAATCTTTAACAGATTGGGTGTTGAAGGTGTATCAAGAACGCAGAGCTCTCGCGCACGCGTTAAGCGACACTAAAACAGCTGTTAAACAACTAAACAAGCTTGTGACAGTGGTTGTAGTACTTGTGACAATACTAGTGTGGCTTCTTCTTTTGGAAATTGCAACAACAAAAGTACTTGTATTCCTTTCATCGCAGTTAGTACTCGCGGCTTTCATGTTTGGAAACACCTGCAAGAATATATTTGAAGCCATCATTTTCGTGTTTGTAATGCATCCATTCGACGTTGGTGATCGATGTGTTATAGATGGTGTCGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTATTCTTGAAACTTAATAATGAAAAGGTGTATTATCCGAATTCAGTTCTCGCTGTAAAACCGATTAGCAATTACTACAGAAGCCCGAATATGTCTGATAGTGTAGAGTTTTCGGTTGATTTTACGACACCAGCTGAGAAAATTGGAGCACTGAAAGAAAAAGTAAAGAGGTATTTGGAGAGGAATCCACAATACTGGCATCCAAATTTTAGCTTGGTAGTGAAGGAGATTGAGAATGTGAATAAGATTAAGATGGGACTTTATGTTACTCACACAATAAACTTTCAAGAGTTTGGAGAGAAAACCAAACGGAAAGGTGAACTAGTGATGGAAGTAAAGAAAATATTTGAAGAACTCAAAATTAGATACAACCTTCTTCCACAAGGTGTTCATCTCAGACACATAGAACCTGATACAAGTTAA 2304 0.3911 MDGNNKNQGGGEVSMMEKKREVVVTISNIGGESHAQDHDHGLKVFESLTENEPASKSPPIKCASPEIRFSPSPNKPPKAPTRNENLTKRKSFVRSVYSKPKSRFGEQPYSIDGTFLEENVLQEELSVSSPYRNSFSKASYSPNNKSGLVNRSVSIASVVTPRTPLMQSPGPAGEDLDEIIYKKVEFSRGKHKRLTTKALIELFVFVMIAGSLIASLTVEELRRTKIWSLGLWRWCMLVMVTFCGMLVTKWFMHIVVFLIEMNFLLKKKVLYFVHGMKKCVQVFIWIGLVLLTWVLLINHGVQRSKLAEKILDGVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLIDETEKVGRSQSLSHFSFRSITNKGGSKKEVIDMAKLHKMKQEKVSSWTMKILVDSVMNSRLSTISNSLDESFYDVENEQTDKEITNEMEATAAAYHVFRNVAASPNCTDIDEDELRRFMIKEEVPLIFPLLAQAETGLITRKSLTDWVLKVYQERRALAHALSDTKTAVKQLNKLVTVVVVLVTILVWLLLLEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAVKPISNYYRSPNMSDSVEFSVDFTTPAEKIGALKEKVKRYLERNPQYWHPNFSLVVKEIENVNKIKMGLYVTHTINFQEFGEKTKRKGELVMEVKKIFEELKIRYNLLPQGVHLRHIEPDTS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01577 767 MobiDBLite consensus disorder prediction 30 85 - -
Vivi3g01577 767 PIRSF Memb_At2g17000 2 767 IPR016688 -
Vivi3g01577 767 SUPERFAMILY Sm-like ribonucleoproteins 593 652 IPR010920 -
Vivi3g01577 767 FunFam Predicted mechanosensitive ion channel 603 652 - -
Vivi3g01577 767 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 14 764 IPR016688 -
Vivi3g01577 767 Pfam Mechanosensitive ion channel 543 749 IPR006685 GO:0016020|GO:0055085
Vivi3g01577 767 Gene3D - 603 652 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01577 Vivi-Chr3 25876775 25879728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01577 53 759 Mechanosensitive Ion Channel Family AT5G12080 60.338 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01577 K22048 - gmx:100777617 1155.58