Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01576 ATGGATGGTAATGGTAAGCATCAAGGTGGTGGAGTAAGCATGATGGAGAAGAAAGGTGAAGTGGTGGTGGGGATTCCAAATGTAGGTGGTGAGAGTAATGACTTTGAGCATGATCATGATCATGGGTTGAAGCTGTTTGAATCTATGCCTCAAGGTGAAAATGAACTTGCTTCAAAGTCACCACCTTTTGACTGTGCTTCCCCTGAGATAAGGTTCACCCCAAGCCCTAATAAACCCCCGAGATATCCTACTACAAATGCAAACCTTACTAAGAGGAAATCTTTTGTGAGATCGGTGTATTCTAAACCCAAATCAAGATTTGGGGAACAACCTTATCATGTTGATGGAACCATTGTAGAAGAGAATGTTTTGCAAGAACAGTTAGCTGTTAGTTCATCTTATAAGAACTCGTTCAATAAAGGTTCGTATTCGTCCAATTACAAATCTGAATCAATTAATAGAAGTGTTTCGATTGCGTCTTTCCTAACTACTAGAACATCTTGGAGGGCATCTCCAAGTCATGCTGGTGAGGATCCTGATGAAATTATTTACAAGAAAGTTGAGTTTAGTAAAGGCAAGCATAAGAGACTAACAACTAGGACTTCCATTGAGTTGTTTGTGTTTGCAATGATTGCGGGGAATATGCTGGCTAGCTTGACTGTTGAGGAACTGAGAAGGATACATATGTGGAGTTTGCGGCTTTGGAGGTGGTGGATGCTTGCGATGGTGACCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATTGTTGTTTTCGTGATTGAAATGAACTTTTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGAAATGTGTCCAGGTTTTCATTTGGATCGGTTTGGTTCTCCTCACATGGGTTCTTTTTATCAAACATGAGGTCCCGCGATCTAAACTGGCCGAAAAGATTTTAGATGGTGTAACATGGACTCTTGTTTCCCTTCTAATTGGAGCATTTCTGTGGGTCGTAAAGACATTGCTGCTGAAGATTTTGGCATCGAATTTCCATGTGAAATCTTTCTTTGATCGAATTCAAGAATCAATCTTCCATCAATATGTTCTGCAAACTCTCTCCGGGCCTCCACTTTTGGATGAGGACGAGAAGATTGGGAGATCGCAGAGGTTGAGCCATTTTAGCTTCCGGAGTATTACCAATAAAGGTGACACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAGCATGAAGCAAGAGAAAGTTTCGTCGTGGACCATGAAGATTTTGGTAGATTCAGTGATGAATTCAAAGCTGTCAACAATCTCTAGTTCACTAGATGAAACATTTTATGATGTAGAAAATAAACAAACTGATAAAGAAATTACAAATGAGATGGAAGCAACTGCTGCAGCCTATCATGTTTTCAGAAATGTCGCTGCTTCCCCTAGTTGCACGGACATTGACGAGAATGAACTCCGTAGATTCATGATTAAGGAAGAAGTTCCTTGGGTATTTCCTTTACTGGCACAGGCAGAGACAGGGCTAATTACCAGAAAATCTTTGACAGATTGGGTGTTGAAGGTATATCAAGAACGCAGAGCACTCGCACACGCCTTAAGCGACACTAAAACAGCTGTTAAACAATTAAACAAGCTTGTGACAGTGGTTGTAGTACTTGTGACCATACTAGTGTGGCTTCTTCTTATGGAAATTGCAAACTCAAAAGTACTTTTATTCATTGCATCGCAGCTAGTACTTGCATCTTTCATGTTTGCAAACACATGCAAGAATATATTTGAAGCCATCATCTTTGTGTTTATAATGCACCCGTTCGACGTTGGCGATCGATGTGTTGTAGATGGTGTTGAGCTAGTGGTCGAAGAAATGAATCTATTGACAACCGTATTCTTGAAACTTAGTAATGAAAAGCTGTATTATCCAAACTCTGTCCTGGCCGTAAAACCCATTAGCAATTATTACAGAAGCCCAGATATGATTGATTCTTTAGAGTTCTGGATTGATTTTAAGACACCAGCAGAGAAAATTGGAGCTCTGAATGAAAAAATAAAGTGGTATGTGGAGAGGACTCCACAATACTGGCATGCTAATTTCGACTTGTTTGTGAGGGAGATTGAAAATGTAAATAGGATTAAGATGGGTCTTTATGTTATTCACACAATGAACTTCCAAGACGTTGGGGCGAAACTCAGGCGGAAAAGTGAACTAGTGATGGAAGTAAAGAGAATATTTGAAGAGCTCAAAATCATATACAACCTTCTTCCACAAGCTGTTCATCTCAGACACACTGAACCTGATACCAGTTAA 2313 0.3982 MDGNGKHQGGGVSMMEKKGEVVVGIPNVGGESNDFEHDHDHGLKLFESMPQGENELASKSPPFDCASPEIRFTPSPNKPPRYPTTNANLTKRKSFVRSVYSKPKSRFGEQPYHVDGTIVEENVLQEQLAVSSSYKNSFNKGSYSSNYKSESINRSVSIASFLTTRTSWRASPSHAGEDPDEIIYKKVEFSKGKHKRLTTRTSIELFVFAMIAGNMLASLTVEELRRIHMWSLRLWRWWMLAMVTFCGMLVTKWFMHIVVFVIEMNFLLRKKVLYFVHGMKKCVQVFIWIGLVLLTWVLFIKHEVPRSKLAEKILDGVTWTLVSLLIGAFLWVVKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLLDEDEKIGRSQRLSHFSFRSITNKGDTKKEVIDMAKLHSMKQEKVSSWTMKILVDSVMNSKLSTISSSLDETFYDVENKQTDKEITNEMEATAAAYHVFRNVAASPSCTDIDENELRRFMIKEEVPWVFPLLAQAETGLITRKSLTDWVLKVYQERRALAHALSDTKTAVKQLNKLVTVVVVLVTILVWLLLMEIANSKVLLFIASQLVLASFMFANTCKNIFEAIIFVFIMHPFDVGDRCVVDGVELVVEEMNLLTTVFLKLSNEKLYYPNSVLAVKPISNYYRSPDMIDSLEFWIDFKTPAEKIGALNEKIKWYVERTPQYWHANFDLFVREIENVNRIKMGLYVIHTMNFQDVGAKLRRKSELVMEVKRIFEELKIIYNLLPQAVHLRHTEPDTS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01576 770 FunFam Predicted mechanosensitive ion channel 606 655 - -
Vivi3g01576 770 Gene3D - 606 655 IPR023408 -
Vivi3g01576 770 Pfam Mechanosensitive ion channel 546 751 IPR006685 GO:0016020|GO:0055085
Vivi3g01576 770 PIRSF Memb_At2g17000 22 770 IPR016688 -
Vivi3g01576 770 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 91 765 IPR016688 -
Vivi3g01576 770 SUPERFAMILY Sm-like ribonucleoproteins 596 655 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01576 Vivi-Chr3 25839743 25843143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01576 50 762 Mechanosensitive Ion Channel Family AT5G12080 55.292 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01576 K22048 - gmx:100777617 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01576 3 25839743 25843143 Vivi3g01576 3 25839743 25843143 ECH