Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01575 ATGGATGGTAATAATAAGCATCAAGGTGGTGAAGTAAGCATGATGGAGAAGAAAAGAGAAGTGGTGGTGGTGATTCCAAATGTGGGTGGAGAGAGCCATGGCCAAGATCATCATGATCATGAGTTGAAAGTGTTTGAATCTTTGCCTCAATGTGAAAATGAGCTTCCTTCAAAATCACCACCACCTTTAAACTATGTTTCCCCTGAGATAATGTTCACCCCAAGCCCGAATAAACCCCCAAAAGCTCCCATAAGAAAGACTTTTGTAAGATCAGTGTATTCCAAGCCCAAATCAAGATTTGGTGAACAACCTTACCCTATTGATGGAAACCTTTTTGAAGAGAATTTTGTTTCTTCAAATTTGCAAGAAGAATTAGCTGCTAGTAATTCACCTTATAGGAACTCATTCAATAAAGGATCATATTCACCTGATAACATATCCGGAACGGTTAATCGAACTGTTTCGTTTACTTCTGTCGTCACGCCTAGAACACCTATGACGGAATCTGCAGTTTCTTCTGATGATGAGGATCCTGATGAAATTATCTACAAGAAAGTTGAATTTAGTAAAGGCAATCGTAAGATACTAACGACTAAGGTTTCGATTGAGTTGTTCGTGTTTGTGAGCATTGCAGGTTGCTTATTGGTTAGCTTAGCAGTTGAGGAACTTAGAAGGACAAAGATTTGGAGTTTAGGGCTTTGGAGGTGGTGTATGCTTGCGATGGTGACCTTTTGTGGCATGCTAGTTACCAAATGGTTCATGCACTTTGTTGTTTTCTTGATTGAAATGAACTTTTTGTTGAGGAAAAAGGTGCTTTATTTTGTCCATGGAATGAAGATTTGTGTCCAGGTTTTCATTTGGATCAGTTTGGTTCTTGTCACGTGGACGCTTTTTATACATCACGGGATCCAGCGATCCAAATTGGTCGCAAAGATTATGAATGATGTAACATGGACTCTTGTTTCCCTTCTCATTGGAGCATTTTTGTGGGTTATAAAGACATTGTTGCTAAAGATTTTGGCATCGAATTTCCATGTGAAATCTTTCTTTGATCGAATTCAAGAATCGATCTTCCATCAATATGTTCTGCAAACTCTCTCTGGGCCTCCACTTATGGAAGAGGGTGAGAAAATCGGCGGGTGCCAAAGTTTTGGTCGATTTAGTTTCACGAGTATAACTGGTAAAGATGGCACAAAGAAAGAGGTTATCGATATGGAAAAACTTCACAAGATGAAGCAAGAGAAAGTTTCCGCGTGGACTATGAAGATTTTGGTAGATGCAGTGATGAATTCAAGGCTCTCCACAATCTCTAATTCACATGATGAAAGTTTTTATGATGTAAAAAATGAACAAACTGGTAAAGAAATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATTATGTTTTCAAGAATGTTGCTGCTTCCCCTTGTTGCAAGGACATTGATGAGGATGAACTCCGTCGCTTCATGAATAAGGAAGAAGTTCTTTTGGTATTTCCTCTACTGGCTGATGCAGAGACAGGGCTAATTACCAGAAAATCTTTAGCAGATTGGGTGTTGAAGGTATATCAAGAACGCAGAGCACTCGCACACGCCTTAAACGACACTAAAACAGCGGTTAAACAACTAAACAAGCTTGTGACAGCGTTCCTAGTAGTGGTGATCGTAGTCGTGTGGCTTCTTCTAATGGAGATTGCAACAACAAAAGTACTTGTATTCCTGTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACGTGCAAGAATATATTTGAATCCATCGTCTTCGTGTTTGTAATGCATCCATTTGACGTTGGTGATCGATGTGTTATAGATGGTGTCGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTATTCTTGAAGCTTAATAATGAAAAAATGTATTATCCAAATTCAGTCCTCGCCATGAAACCGATTAGCAATTATTACAGAAGCCCGAATATGACTGAAGGTGTAGAGTTTTCCATTGATTTTACGACACCAGCAGAGAAAATTGGAGCACTGCAAGAAAAAGTAAAGAGGTATTTGGAGAGGAATCCACAATACTGGCATCCAGTGTTTTGCTTGTTTGTGAAGGAAATTGAAAATGTAAATAAGATTAAGATGGGTCTTTATGTTACTCACACAATGAATTTTCAAGACTTTGGGGAGAAATGCAAAAGGACAAGTGAATTAGTGATTGAAGTAAAGAGAATATTTGAAGAGCTCAATATCAGATACAGCCTTCTTCATCAAGGTGTTCATCTCAGACACATGGAACCTGATACCAGTTAA 2310 0.3874 MDGNNKHQGGEVSMMEKKREVVVVIPNVGGESHGQDHHDHELKVFESLPQCENELPSKSPPPLNYVSPEIMFTPSPNKPPKAPIRKTFVRSVYSKPKSRFGEQPYPIDGNLFEENFVSSNLQEELAASNSPYRNSFNKGSYSPDNISGTVNRTVSFTSVVTPRTPMTESAVSSDDEDPDEIIYKKVEFSKGNRKILTTKVSIELFVFVSIAGCLLVSLAVEELRRTKIWSLGLWRWCMLAMVTFCGMLVTKWFMHFVVFLIEMNFLLRKKVLYFVHGMKICVQVFIWISLVLVTWTLFIHHGIQRSKLVAKIMNDVTWTLVSLLIGAFLWVIKTLLLKILASNFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEGEKIGGCQSFGRFSFTSITGKDGTKKEVIDMEKLHKMKQEKVSAWTMKILVDAVMNSRLSTISNSHDESFYDVKNEQTGKEITNEMEATAAAYYVFKNVAASPCCKDIDEDELRRFMNKEEVLLVFPLLADAETGLITRKSLADWVLKVYQERRALAHALNDTKTAVKQLNKLVTAFLVVVIVVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFESIVFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKMYYPNSVLAMKPISNYYRSPNMTEGVEFSIDFTTPAEKIGALQEKVKRYLERNPQYWHPVFCLFVKEIENVNKIKMGLYVTHTMNFQDFGEKCKRTSELVIEVKRIFEELNIRYSLLHQGVHLRHMEPDTS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01575 769 FunFam Predicted mechanosensitive ion channel 605 654 - -
Vivi3g01575 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 91 766 IPR016688 -
Vivi3g01575 769 Gene3D - 605 654 IPR023408 -
Vivi3g01575 769 PIRSF Memb_At2g17000 4 769 IPR016688 -
Vivi3g01575 769 SUPERFAMILY Sm-like ribonucleoproteins 595 654 IPR010920 -
Vivi3g01575 769 Pfam Mechanosensitive ion channel 546 751 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01575 Vivi-Chr3 25805815 25809331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01575 49 761 Mechanosensitive Ion Channel Family AT5G12080 56.828 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01575 K22048 - gmx:100803107 1046.19