Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01567 ATGGCAACTCAACTCCTAAAGCTTTCCCTCTCCTCGCCACCTAACCTTTCTTTCAATTACACACTCAATCTCAATCACCACCACCACTTCACTTCTCTACTACCCTCAAAACGACGTCGCTACCACCACCTTAACCACCGCCAAATTACCCGCCCATGCTTCTCCGTCTCGAACTCAATCAGCACTGAAATTCTTTCACTAGAATCATCTCTTCTCCAATCCCCGCCACAAATCAAAGACTCGCCGGTTCTTCTCGATGTCACCGGAATGATGTGCGGCGGCTGCGTCTCCCGAGTCAAAACCATTCTCTCCGCCGACGACCGAGTAGACTCCGTCGTGGTCAACATGTTGACCGAAACCGCAGCTGTTAAGCTTAAACGCCTCGAAGAGGAACACGCGAGCGTTGCCGAGAGCCTTGCTCTGCGACTGAGCGAATGCGGGTTTCCGACTAAGAAGAGGGAGTCTGGTTTGGGAGTGGCGGAAAATGTTAGGAAGTGGAAGGAATTGGTGAAGAAGAAGGAGGAACTTCTCGCCAAGAGCCGTAACCGCGTCGCTTTGGCTTGGACTCTGGTCGCACTCTGCTGTGGATCGCATGCTTCGCATATTTTTCATTCTTTCGGGATTCATATTGCTCATGGACCGGTTATGGAATTTCTTCATAATTCATATGTGAAAGGTGGATTAGCTTTGAGCGCGTTATTGGGACCTGGAAGAGAGTTACTCTTTGATGGTCTAAATGCTTTGAAGAAAGGGTCGCCAAATATGAACTCTCTCGTGGGATTTGGTTCAATAGCTGCTTTCATCATCAGTTCGATCTCACTACTGAATCCCGGGCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTAGAAGAAAAAGCAAGGATTCAGGCGTCTAGTGATATGAATGAATTACTTTCACTAATATCTACTCAGTCAAGACTTGTCATTACATCATCAGAAGGTTCCCTATCTACTGACAGTGTGCTGAGCTCTGATTCAATTTGTGTGGAAGTTCCAACTGACGATATTCGCGTAGGAGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTCGTTGCAGGAAGAAGCGTTGTGGACGAATCCATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTTTCAGCAGGAACTATAAACTGGGATGGTCCTTTAAGGATTGAATCTACTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTTCAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATTTAGCATAATGACTCTCTCAGCAGCAACATTTGCATTTTGGTATTTTTTTGGAACACACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCGGAAGGAGATCCTCTGCTTTTAAGTTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCATGTGCGCTGGGTCTTGCCACACCAACAGCAATCCTAGTTGGCACCTCACTTGGCGCAAGAAAAGGACTTCTAATCAGAGGAGGGGATGTGCTAGAACGCTTGGCCGGAGTAAATTATATTGCTCTAGATAAGACAGGAACCCTTACCAGAGGAAAACCAGTTGTTTCTGCCATAGGCTCTATTGAGTATGGAGAGTCGGAAATTCTTCAGATTGCTGCGGCAGTGGAGAAAACTGCATCTCATCCAATAGCAAAGGCTATTACTAACAAAGCTGAGTCTTTAGAATTGGTCCTTCCACTCACAAAAGGACAGATAGTTGAACCAGGTTTTGGAACCTTGGCAGAAATAGATGGGCGTTTGGTTGCGGTTGGGTCTCTAGAATGGGTCTGTGATCGTTTCAAGACTAGAATGAACCCGTCTGCTTTGATGAATCTTGAACGTGCTTTGATGAATCATTCATCGAGTACATCATCTTCGAAATATTCTAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACATTGTGCGTGAAGATGCTGAATCTACTGTAATGAGGCTCAAGAAGAAGGGGATTAAAACGGTCCTCTTATCAGGAGACAGGGAAGAAGCAGTTGCAATAATAGCTGAGACAGTTGGAATTGAAAACAATTTTGTTAAAGCATCCTTGTCTCCTCAGCAGAAATCTGCATTTATTTCATCTCTAAAAGCTGCTGGACATCGTGTTGCAATGGTAGGTGATGGGATCAATGATGCGCCCTCTTTGGCCGCAGCTGATGTTGGGATAGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCAGATGCAGCATCCATCATACTTTTGGGCAACAAAATTTCACAGGTTATTGATGCATTAGACCTAGCACAAGCAACAATGGCAAAAGTTTACCAAAATTTGTCTTGGGCAGTGGCTTACAATGTTATTGCCATTCCCATTGCTGCTGGTGTGTTACTTCCCCAATTTGACTTTGCTATGACACCATCACTTTCAGGAGGACTAATGGCTATGAGCTCCATCTTGGTGGTTAGCAACTCACTGCTTTTAAAGCTTCATGGGTCTCAGACCTCTGGAAAGGGAACACTGCAGTGA 2670 0.4521 MATQLLKLSLSSPPNLSFNYTLNLNHHHHFTSLLPSKRRRYHHLNHRQITRPCFSVSNSISTEILSLESSLLQSPPQIKDSPVLLDVTGMMCGGCVSRVKTILSADDRVDSVVVNMLTETAAVKLKRLEEEHASVAESLALRLSECGFPTKKRESGLGVAENVRKWKELVKKKEELLAKSRNRVALAWTLVALCCGSHASHIFHSFGIHIAHGPVMEFLHNSYVKGGLALSALLGPGRELLFDGLNALKKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSLSTDSVLSSDSICVEVPTDDIRVGDSVLVLPGETIPIDGRVVAGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIESTSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVFSIMTLSAATFAFWYFFGTHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGVNYIALDKTGTLTRGKPVVSAIGSIEYGESEILQIAAAVEKTASHPIAKAITNKAESLELVLPLTKGQIVEPGFGTLAEIDGRLVAVGSLEWVCDRFKTRMNPSALMNLERALMNHSSSTSSSKYSKTVVYVGREGEGIIGAIAISDIVREDAESTVMRLKKKGIKTVLLSGDREEAVAIIAETVGIENNFVKASLSPQQKSAFISSLKAAGHRVAMVGDGINDAPSLAAADVGIALQNEAQENAASDAASIILLGNKISQVIDALDLAQATMAKVYQNLSWAVAYNVIAIPIAAGVLLPQFDFAMTPSLSGGLMAMSSILVVSNSLLLKLHGSQTSGKGTLQ 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01567 889 PANTHER ATP7, ISOFORM B 77 877 - -
Vivi3g01567 889 NCBIfam heavy metal translocating P-type ATPase 255 875 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vivi3g01567 889 Gene3D - 542 815 IPR023214 -
Vivi3g01567 889 PRINTS P-type cation-transporting ATPase superfamily signature 687 698 - -
Vivi3g01567 889 PRINTS P-type cation-transporting ATPase superfamily signature 764 783 - -
Vivi3g01567 889 PRINTS P-type cation-transporting ATPase superfamily signature 551 565 - -
Vivi3g01567 889 PRINTS P-type cation-transporting ATPase superfamily signature 709 719 - -
Vivi3g01567 889 PRINTS P-type cation-transporting ATPase superfamily signature 384 398 - -
Vivi3g01567 889 FunFam Copper-transporting ATPase PAA2, chloroplastic 562 695 - -
Vivi3g01567 889 SUPERFAMILY HAD-like 549 872 IPR036412 -
Vivi3g01567 889 ProSiteProfiles Heavy-metal-associated domain profile. 81 151 IPR006121 GO:0046872
Vivi3g01567 889 FunFam Copper-transporting ATPase 1, putative 307 438 - -
Vivi3g01567 889 Gene3D - 562 695 IPR023299 GO:0000166
Vivi3g01567 889 CDD P-type_ATPase_HM 183 874 - -
Vivi3g01567 889 Pfam E1-E2 ATPase 344 531 - -
Vivi3g01567 889 SUPERFAMILY Calcium ATPase, transmembrane domain M 284 545 IPR023298 -
Vivi3g01567 889 SFLD C1.7: P-type atpase like 534 817 - -
Vivi3g01567 889 Gene3D - 76 155 - -
Vivi3g01567 889 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 553 645 IPR023299 GO:0000166
Vivi3g01567 889 Gene3D - 307 438 - -
Vivi3g01567 889 SFLD p-type atpase 534 817 IPR044492 -
Vivi3g01567 889 Pfam Heavy-metal-associated domain 85 147 IPR006121 GO:0046872
Vivi3g01567 889 Coils Coil 163 183 - -
Vivi3g01567 889 NCBIfam HAD-IC family P-type ATPase 336 856 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi3g01567 889 SUPERFAMILY Calcium ATPase, transduction domain A 344 434 IPR008250 -
Vivi3g01567 889 CDD HMA 85 149 IPR006121 GO:0046872
Vivi3g01567 889 SUPERFAMILY HMA, heavy metal-associated domain 83 126 IPR036163 GO:0046872
Vivi3g01567 889 ProSitePatterns E1-E2 ATPases phosphorylation site. 553 559 IPR018303 -
Vivi3g01567 889 Pfam haloacid dehalogenase-like hydrolase 547 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01567 Vivi-Chr3 25645461 25661678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01567 246 876 Primary Pumps ATPases AT1G63440 37.209 4.53e-117 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01567 K17686 - gmx:100127402 1377.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01567 3 25645461 25661678 Vivi3g01567 3 25645461 25661678 ECH