Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01552 ATGAGCTCTAAAAAGATTACATGGAAGTCTATTGTTTTGATCTTAGGTTGTTACAAGACAACATACTCTTTGGAGGAATCGAAAAAACAAGGTTCATTCCAAAGGCTGTCTTTGTCTGATATAAGTATTTCTAACTCTAGTATTCAAGCTATTGAGGATCTTTCGGTTTCTTTAGCTGGTTCAAAGCTTTACATGTTCAATCTCGAGGAGTTACGAGAAGCAACTCATGGTTTCTCATGGAGTAATTTGTTAGGTGAAGGTGGTTTTGGACCTGTTTATAAGGGTTTTGTTGATGACAAACTTAGACATGGTTTGAAAGCTCAACCTGTTGCTGTCAAACGGTTGAACTTGGATGGATCACAAGGTCACAGAGAATGGCTGGCGGAGATTATATTTCTTGGACAGCTTCGACATCCACATCTTGTGAAGTTAATTGGATACTGTTGCGAGGAAGAGCAGAGGCTTTTGGTGTATGAATATATGGCGAGAGGAAGTTTGGAGAATCAATTATTCAGAAGATATTCGGCTACCTTACCATGGTCGACGAGAATGAAAATTGCATTAGGTGCGGCTAAGGGACTAGCTTTTCTTCATGAAGTAGATAAGCCTGTAATATATAGAGATTTCAAAACTTCGAATATATTACTGGATTCGGATTATACTGCTAAATTATCAGATCTAGGATTAGCTAAAGATGGTCCTGAAGGAGAAGAAACACATGTGACAACAACATGTATAATGGGAACAAAAGGATATGCTGCTCCCGAGTATATCATGTCAGGTCATCTTTCTACAAAGAGTGATGTGTATAGCTATGGAGTAGTGTTGTTGGAACTGCTTACAGGAAAGAGAGTAGTGGACAAAACCAGACCAAATAAAGAGAGGCACCTTGTGGAATGGGCAAGACCTATTTTGAGAGATCAAAGAAAGGTTCTTAATATCATAGACTCAAGATTAGAGAGACAGTTTTCTGTTAAAGGAGTTTTGAAGGTTGCTGCATTGACTTATAAATGCTTAAGCCATCACCCTGCTCCAAGGCCTAATATGAGTGATGTGGTAAAGATATTGGAATCACTACAAGACTTTGATGATGTGATCATAGGACCATTTGTCTATGTGGCTGTTAGTGAAAGTGGCCAATGA 1143 0.3867 MSSKKITWKSIVLILGCYKTTYSLEESKKQGSFQRLSLSDISISNSSIQAIEDLSVSLAGSKLYMFNLEELREATHGFSWSNLLGEGGFGPVYKGFVDDKLRHGLKAQPVAVKRLNLDGSQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEQRLLVYEYMARGSLENQLFRRYSATLPWSTRMKIALGAAKGLAFLHEVDKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEETHVTTTCIMGTKGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGKRVVDKTRPNKERHLVEWARPILRDQRKVLNIIDSRLERQFSVKGVLKVAALTYKCLSHHPAPRPNMSDVVKILESLQDFDDVIIGPFVYVAVSESGQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01552 380 ProSiteProfiles Protein kinase domain profile. 78 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01552 380 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
Vivi3g01552 380 FunFam Serine/threonine-protein kinase BIK1 45 160 - -
Vivi3g01552 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vivi3g01552 380 Gene3D Phosphorylase Kinase; domain 1 39 160 - -
Vivi3g01552 380 PANTHER OS01G0588500 PROTEIN-RELATED 47 360 - -
Vivi3g01552 380 Gene3D Transferase(Phosphotransferase) domain 1 161 366 - -
Vivi3g01552 380 CDD STKc_IRAK 84 359 - -
Vivi3g01552 380 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 365 - -
Vivi3g01552 380 SUPERFAMILY Protein kinase-like (PK-like) 57 358 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01552 Vivi-Chr3 25512469 25514324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01552 66 356 Glycoside Hydrolase AT3G07070 50.680 1.14e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi3g01552 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01552 - - gmx:100805771 631.328