Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01547 ATGGATTCATCAAACGACGATCATAATCAGAATCAAACTAAGAATCTCAAGCGAAGTTTCGATCAATTGTACGCAAAACCCCATGTTGAAGTTTCCCCCTCTCAAGAATCTCTCGTTACAAATTTGGTTCCTAGAAGGGATCAGTTAGAGGCGTTTGAGATTGCAAAGAGGAGGAACACAATAGCAATCATGGATACAGGTTCAGGGAAAACACTGATAGCTATAATGCTTATTAAGGAAGTTGGTCAAGCTGTTAGGTCTAGTGGTGTCAAAAAGATTATTGTTTTCTTAGCTCCAACTGTTGTTTTGGTCAATCAGCAATACAAGAATATAAAACATAATACTGATCTTCAAGTTGAGGAATACCATGGGGCTAAAGGAGTTGATACATGGAATTTCGAGAGCTGGCAGAAGGAAGTTACGGACAATGATGTAATGGTTATGACACCCCAGACTCTTTTGGATGCCTTAAGAAAAGCATTCTTGAGTATAGAAACGATATGCTTGATAGTTATCGATGAGTGTCATCAAGCATCAGGCAACCATCCCTATGCAAAGATAATGGTGGAATTTTATCACCAAGCTAATGTGAAGCCAAAGATTTTTGGGATGACAGCATCACCAATTGGTAAAAGAGGTGTTTCTTCTACTTTGGATTGTAAGTATCAGATATCAGACCTTGAAAACCTCTTGGATTCTCGGAAATATACGGTAAAAGATCGGACAGAGATGGATACATGTATCCCATCTGCAAAAGAGAGTTGTAGATACTATGACCAAGCTCGGTCCCCTGCTTTGAGTTTGAAGCCGAAAATTGAAGCCTCGTGGTCGAAGTGTGATGTGTTGTTATCAGATTTTAAAAGTAGCTATAAGGATATGGACGATAAATTTAAGACACTGCATCAGAGGATGTCCAATGAGCTTGCGAAGATTTTATACTGCCTCGAAGATCTTGGACTGCTGTGTGCTTGTGAGGCTGCTAAAATATGTCATCAGAAATTCTCCAAAATTTACGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAGTGTGTAACTGTCATTGAAGAAGTAATCCAAATAATTGAAGAATCCCTCCATCTTGCTGATGAAGTGATTTTGGATGTTGAATTTGATTTTTCAAAGGCAGTGGACATGGGATACATATCACCTAAATTATTTGAACTCATTAAACTCTTCCAATCATTTGGAGAGCCTAGTCAGTTATTGTGCCTCATTTTTGTGGAAAGAATCATTGCGGCTAAGGTGATTGAAATATTTGTGAAAAAAGTTTCCCAGATATCTCATCTCACGGTTGCCTATGTAACTGGAAGCAATACATCAGCTGATGCACTGGCTCGTAACAGGCAGAAAGAGATAATGGATTCTTTCCGATCCGGAAAGATCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATCCATGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGGCGTGCTAACTCCCAATTCATCTTGATGATCGAGAGGGGAAACTTGAAGCAAAGAAATCAGCTTTTTGACATAATCAAGGGGGAGCGTTCCATGACTGATGCAGCTGCTAGCAAAGACAATGAATCTAATTTAAGGGCGTTTACAGTAAGGAAAACAGAAGCATACTATGTGGATTCTACTGGAGCATCAGTAAATTTAGATTCTAGTGTTAGTCTTGTAAATCAATATTGCGAAAAGCTCCCACGAGATAAGTATTCCTCTCCAAAGCCCAATTTTGAGTTACTACCTGTGGAGGGAGGGTACCAGTGTAAGCTAATTTTACCACCTAATGCCGCTTTCCAAACAATAGTTGGGTCTTCAGGAAAAGACATGCGTTTGGCAAAGAGTCTTGTATGTTTAGAAGCTTGTAAGAAGCTTCATCAAATGGGCGCCTTAAATGATCATCTTGTTCCTTTCGTTGAAGATCCTGCAGAAGCAGACTTGAAAAGCAAGGAATTAAGTTCAGGTGCAGTTGCAGGCGCAGGAACCACGAAAAGAAAAGAGCTACACGGAACGACTGGAATTCGGGCATTATGTGGTTCATGGGGGGACAAACTTGATGGAGCCAAATTTCATGGGTATAAGTTTGAATTCCAATGTAATATTGTCCATGAAATTTACTCTGGATTTGTTCTTCTGGTTGAGTCAAAGCTTGACGATGACGTGGGAAGTATGGACTTAGATCTGTATTTAATCTCAAAGATGGTGAAGACTTCTGTCATTCCATGTGGGGAGGTTGACTTGGATGCTGAACAGGTGGCGAAAGCAAAAAGCTTCCATGAGATTTTTTTCAATGGTTTGTTTGGGAGATTGATTCGTAAATCCGAAACAGCGAAAGGAGAAAGGGAGTTTTTACTGCAGAAAGACACAGATTTATTGTGGAATCCAAAAAACTCGTATTTGCTTCTACCACTTGAGAAGTCAAATGATATATGTCCTGGATCTTTGCAAATACACTGGTCTGCAATCAGTTCTTGTTCTTCTGCTATTGAGTTTGTAAGGCGTAAATTTTCGTTGGTTGCTGAAGATTCTGATGATACCAGTTCATCAGCTATGGAACCCGAAAGCACTAACATTTTTCACTTTGCCAATGCTGTCGCTGATGTTAGTAACATTAAAGACACGGTAGCTTTGGCGGTTCATACTGGAAAAATTTATTGTATCATTGATGTTGTTGATAACTCATCTGCTGAAAGTCCTTTTGATGGAAACAATGACAAGTCGGGAAGCAAAATAACGTTCTCTCAATATTTCAAGGAAAGGTATCGAATCACTCTAAAACATCCAGAACAGCCTTTGTTAAGGCTGAGGCAAGGTCATAATGCACATAATCTTTTTTTGAACACTCCCGAGGAAGATGCAGGGGAAAAGTCATCACAAGTTGGCCCGATAAATCCAAAGGCACCAATGCATGTTCACATGCCACCTGAGCTTCTTTGCCTTCTTGATGTTAAAAGAGACGTGTTGAAGTCAATGTACTTGCTACCGTCTCTTATGTACCGTATTGAATCTTTAATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGATCATGCCGACAATTTCAAGATACCTAGCTCTCTGATCCTTGAAGCACTTACAACTTTAAGATCCTGTGAAAAGTTTTCTATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGCTGTCAGCTGTCATCTCTTTCTTAAATATCCTAAGAAACATGAAGGACATTTATCTGCCAAAAGACAATGGGCTGTTCGTAATTCAACCCTTCATAAACTTGGAATAGATCGCAAATTACAGGGATATATTCGAGACTCCGCATTTGAACCACGTCGTTGGATTGCTCCTGGACAAGACTCTATACATACTGCTCCTTGTGATTGTGGGTTGGAAACCCTGGAGGTGCCTTTTGATGCAAAGTTCATTACGGAAGATCCACAAGTTGTGGTTGGGAAATTGTGTGACCGGGGTCACCGCTGGATGTGTTCAAAGACTATTGCCGACTGTGTTGAAGCTCTTATAGGAGCATACCACGTTGGTGGTGGATTGGTTGCTTCACTTCACGTGATGAAATGGCTAGGAATTGATTCGGAACTTGAACTGTCCATGGTTGAAGAAGCCATTGTTGCTGCATCTCTACATACATATAAGCCAAAAGTAAATGAGATTGCAAGCCTGGAGACAAAAATTGGATATGAATTTTCTGTCAAGGGACTCTTAGTGGAGGCAACAACACATTTATCCGAGACAGAACATGGAACTGGTTGCTGCTACGAGAGGCTTGAATTCCTCGGTGACTCAGTGTTGGACCTTCTCATCACATGGCATCTATATCAGAGTCACACTGAAATTGACCCGGGAGAGTTGACTGATTTGCGTTCTGCTTCTGTCAATAATGATAGTTTTGCACAAGCTGCTGTTAAACATAACCTTCACCCGCACCTTATGCATAGCTCAGGATTATTACAAGGCCAAATATCAGAATATGTGAAGGCCATTTCTGAATCCGAAGACAACACTGTATCACTTCCCGGGGTTAAAGCTCCCAAGGCACTTGGAGATCTAGTTGAGAGTATCGCAGGGGCTATACTAATTGATACCAAACTCGACCTTGATCAAGTGTGGAAGGTTTTCAATCCTCTGTTATCTCCCATTGTTACTCCCGACAAACTTGAACTGCCTCCATTGCGTGAATTAAATCAATTATGTGACTCTCTCGGCTATTTTGTAAAAGTAAAAGTAAAGTGCGATAAGAAGGGATTCATGGACCATGTTGTGCTTAGTGTACAGCTGCCAAATGCTCTTCTGGTTCGAGACGGAAGGGGACCGAATAAAAAATCTGCAAAAGGAGATGCTGCTCATCATTTGTTGAAGGATCTTGAGAAAAGGGGAATTTCGTATAGCTCGGCCAAGGGTAAAAGAGTAATAGATTTCAGTACTCCTGCTTGTCAAGCTGAAGAACAACCCCCACAGCCAGTAGCACATAAAAAACCGAAATTGGACAAATCTAACTTAACAGCAAAGGAATCTACTTCTGATGTCAAGCAGACTTCCAGTGATTCCTCTGATTGTAATGGTTCCGTTCCAGTTATTTTATCGATTAATATGAAGAAGGGAGGACCACGGAGCTTACTATATGACTTGTGCAAGAGAAAGCAGTGGCCATTGCCTTCATTTGATTCAACAGAATACAAAGACAGAACTCAATTTCAATCGGTTGAAGGCTTGGAAGGAAGCAAAGGAACAAACTGTTTTGTGTCGAAAATAACCTTGTGCATACCGGATCATGGTAATATAGAATGCAACGGAGAGGCTAGAGCTGATAAGAAGAGCTCATTTGATTCTGCTGCAGTTAATGTGCTCTATGAGCTTCAACGCCTCGGAAAAGTTAAAATCGCGGATGTTTCCCAATAA 4977 0.4061 MDSSNDDHNQNQTKNLKRSFDQLYAKPHVEVSPSQESLVTNLVPRRDQLEAFEIAKRRNTIAIMDTGSGKTLIAIMLIKEVGQAVRSSGVKKIIVFLAPTVVLVNQQYKNIKHNTDLQVEEYHGAKGVDTWNFESWQKEVTDNDVMVMTPQTLLDALRKAFLSIETICLIVIDECHQASGNHPYAKIMVEFYHQANVKPKIFGMTASPIGKRGVSSTLDCKYQISDLENLLDSRKYTVKDRTEMDTCIPSAKESCRYYDQARSPALSLKPKIEASWSKCDVLLSDFKSSYKDMDDKFKTLHQRMSNELAKILYCLEDLGLLCACEAAKICHQKFSKIYGECEVYRKANLQCVTVIEEVIQIIEESLHLADEVILDVEFDFSKAVDMGYISPKLFELIKLFQSFGEPSQLLCLIFVERIIAAKVIEIFVKKVSQISHLTVAYVTGSNTSADALARNRQKEIMDSFRSGKINLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMIERGNLKQRNQLFDIIKGERSMTDAAASKDNESNLRAFTVRKTEAYYVDSTGASVNLDSSVSLVNQYCEKLPRDKYSSPKPNFELLPVEGGYQCKLILPPNAAFQTIVGSSGKDMRLAKSLVCLEACKKLHQMGALNDHLVPFVEDPAEADLKSKELSSGAVAGAGTTKRKELHGTTGIRALCGSWGDKLDGAKFHGYKFEFQCNIVHEIYSGFVLLVESKLDDDVGSMDLDLYLISKMVKTSVIPCGEVDLDAEQVAKAKSFHEIFFNGLFGRLIRKSETAKGEREFLLQKDTDLLWNPKNSYLLLPLEKSNDICPGSLQIHWSAISSCSSAIEFVRRKFSLVAEDSDDTSSSAMEPESTNIFHFANAVADVSNIKDTVALAVHTGKIYCIIDVVDNSSAESPFDGNNDKSGSKITFSQYFKERYRITLKHPEQPLLRLRQGHNAHNLFLNTPEEDAGEKSSQVGPINPKAPMHVHMPPELLCLLDVKRDVLKSMYLLPSLMYRIESLMLSSQLRAEINDHADNFKIPSSLILEALTTLRSCEKFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGHLSAKRQWAVRNSTLHKLGIDRKLQGYIRDSAFEPRRWIAPGQDSIHTAPCDCGLETLEVPFDAKFITEDPQVVVGKLCDRGHRWMCSKTIADCVEALIGAYHVGGGLVASLHVMKWLGIDSELELSMVEEAIVAASLHTYKPKVNEIASLETKIGYEFSVKGLLVEATTHLSETEHGTGCCYERLEFLGDSVLDLLITWHLYQSHTEIDPGELTDLRSASVNNDSFAQAAVKHNLHPHLMHSSGLLQGQISEYVKAISESEDNTVSLPGVKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVKCDKKGFMDHVVLSVQLPNALLVRDGRGPNKKSAKGDAAHHLLKDLEKRGISYSSAKGKRVIDFSTPACQAEEQPPQPVAHKKPKLDKSNLTAKESTSDVKQTSSDSSDCNGSVPVILSINMKKGGPRSLLYDLCKRKQWPLPSFDSTEYKDRTQFQSVEGLEGSKGTNCFVSKITLCIPDHGNIECNGEARADKKSSFDSAAVNVLYELQRLGKVKIADVSQ 1658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01547 1658 Gene3D Ribonuclease III domain 1240 1411 IPR036389 GO:0004525|GO:0006396
Vivi3g01547 1658 PANTHER DICER-RELATED 58 1488 - -
Vivi3g01547 1658 MobiDBLite consensus disorder prediction 1503 1545 - -
Vivi3g01547 1658 Gene3D - 39 273 IPR027417 -
Vivi3g01547 1658 FunFam Dicer-like 104 1026 1215 - -
Vivi3g01547 1658 CDD DEXHc_dicer 44 240 - -
Vivi3g01547 1658 SUPERFAMILY PAZ domain 893 1005 IPR036085 GO:0005515
Vivi3g01547 1658 Gene3D Ribonuclease III domain 1035 1214 IPR036389 GO:0004525|GO:0006396
Vivi3g01547 1658 SUPERFAMILY RNase III domain-like 1243 1409 IPR036389 GO:0004525|GO:0006396
Vivi3g01547 1658 ProSiteProfiles PAZ domain profile. 894 1006 IPR003100 GO:0005515
Vivi3g01547 1658 FunFam Endoribonuclease dicer-like 1 1238 1410 - -
Vivi3g01547 1658 FunFam Endoribonuclease dicer-like 1 574 670 - -
Vivi3g01547 1658 FunFam Endoribonuclease dicer-like protein 39 278 - -
Vivi3g01547 1658 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1461 1483 IPR014720 -
Vivi3g01547 1658 MobiDBLite consensus disorder prediction 1530 1545 - -
Vivi3g01547 1658 Pfam Helicase conserved C-terminal domain 410 513 IPR001650 -
Vivi3g01547 1658 CDD RIBOc 1050 1214 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 520 IPR027417 -
Vivi3g01547 1658 Gene3D - 1568 1647 - -
Vivi3g01547 1658 Pfam Type III restriction enzyme, res subunit 30 208 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vivi3g01547 1658 MobiDBLite consensus disorder prediction 1513 1529 - -
Vivi3g01547 1658 SMART ultradead3 40 244 IPR014001 -
Vivi3g01547 1658 Pfam Dicer dimerisation domain 579 664 - -
Vivi3g01547 1658 Pfam PAZ domain 896 1027 IPR003100 GO:0005515
Vivi3g01547 1658 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 579 669 IPR005034 GO:0016891
Vivi3g01547 1658 SMART riboneu5 1050 1223 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 SMART riboneu5 1259 1412 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 SMART PAZ_2_a_3 869 1030 IPR003100 GO:0005515
Vivi3g01547 1658 FunFam Endoribonuclease dicer-like 1 383 546 - -
Vivi3g01547 1658 Gene3D paz domain 876 1006 - -
Vivi3g01547 1658 Gene3D Dicer dimerisation domain 574 672 IPR038248 -
Vivi3g01547 1658 ProSitePatterns Ribonuclease III family signature. 1280 1288 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 CDD RIBOc 1260 1410 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 ProSiteProfiles Ribonuclease III family domain profile. 1244 1389 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 555 IPR001650 -
Vivi3g01547 1658 SUPERFAMILY RNase III domain-like 1044 1220 IPR036389 GO:0004525|GO:0006396
Vivi3g01547 1658 Gene3D - 383 545 IPR027417 -
Vivi3g01547 1658 ProSiteProfiles Ribonuclease III family domain profile. 1031 1203 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 SMART helicmild6 425 513 IPR001650 -
Vivi3g01547 1658 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 226 IPR014001 -
Vivi3g01547 1658 Pfam Ribonuclease III domain 1068 1201 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 Pfam Ribonuclease III domain 1280 1388 IPR000999 GO:0004525|GO:0006396
Vivi3g01547 1658 CDD SF2_C_dicer 388 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01547 Vivi-Chr3 25475092 25484299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01547 443 511 Eukaryotic Initiation Factors Gene Family AT1G72730 46.377 1.48e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01547 K11592 - gmx:100806831 2335.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01547 3 25475092 25484299 Vivi3g01547 3 25475092 25484299 ECH
Vivi1g00845 1 18138199 18148976 Vivi3g01547 3 25475092 25484299 ECH