Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01538 ATGAATGCAAGCAAGTGTATAACTACTATACTACAAATGGATCATCATCATGAAATCATCACTGCTCAAACTAAAACCCTAGCATCATCATCATCATCATCATCAACATATAATGATGATAACAACAAGAAAATGTATAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTATGTGAAATAAGGCTACCGAATAGCCGTGACAGAATCTGGTTAGGATCATACGATTCACCTGAGAAAGCAGCAAGAGCTTTCGACGCTGCCCTTTACTGTCTTCGTGGTCGTCATGCAACTTTCAATTTCTCTGATTCACCTTTTCATTTGGAGAACACTGCAGTTTCTAACGATCCGCAACAGATTCGAGAGATTGCTGCTAACTTTGCCAACAAAAATCCACCAATTGTTATTGATAGTAATAATAATCATAATAATGGAAATAATAACACTGATCAATCCAATGTTGTGCCTGAAATTAATGGCTTTTCAGGTTCTTCTACAACTATGCATGATATCGGGAACACTATTGATTGGACATTTTTGAACATGTTAGAAGAACATGGTTCAAATTATGATCCTAATTTAGTTAGTTCTGAAAATTATGATGATTTTTTCTATTCTGACTTAGAAAAGATGCATTCGGATGAGTTATTGTATTACACTTTACCGCCGCTTTTTGAGGATCATAATACTAATCAAAAGGAATTAGTAGAAGCTGAAGGTGATAATGATGTTTATGATGACCCTTTTTGTCAGCAATCATTCCTTTGGAACTTCTGA 777 0.3552 MNASKCITTILQMDHHHEIITAQTKTLASSSSSSSTYNDDNNKKMYRGVRKRKWGKWVCEIRLPNSRDRIWLGSYDSPEKAARAFDAALYCLRGRHATFNFSDSPFHLENTAVSNDPQQIREIAANFANKNPPIVIDSNNNHNNGNNNTDQSNVVPEINGFSGSSTTMHDIGNTIDWTFLNMLEEHGSNYDPNLVSSENYDDFFYSDLEKMHSDELLYYTLPPLFEDHNTNQKELVEAEGDNDVYDDPFCQQSFLWNF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01538 258 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vivi3g01538 258 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vivi3g01538 258 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Vivi3g01538 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 168 - -
Vivi3g01538 258 Pfam AP2 domain 46 94 IPR001471 GO:0003700|GO:0006355
Vivi3g01538 258 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Vivi3g01538 258 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Vivi3g01538 258 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Vivi3g01538 258 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vivi3g01538 258 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01538 Vivi-Chr3 25343813 25344628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01538 46 203 AP2-EREBP Transcription Factor Family AT1G19210 47.170 1.47e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g01538 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01538 - - psat:127084170 309.301