Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01537 ATGGATCATCATCATATCAGTACTGATCATGATCAAGTCAAAGGTAAAACCTCATTGTCTTCAAGTGGTAATGATGATGATAACAACAAGAAGTTGTATAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTGTCTGAAATCCGGCTACCGAATAGCCGTGAAAGAATATGGTTAGGATCATACGATTCTCCTCAGAAAGCAGCAAGAGCGTTTGATGCGGCACTTTACTGTCTTCGTGGTCGTCATGCAAGTTTCAATTTCTCTGATTCACCTTTTCATTTGGAAAACACTGCAGTTTCTAATGATCCGCAACAGATTCGAGAGATTGCTGCTAACTTTGGAAATAAAAATCCATCAATTGTTATTGATAATAATAATAATAATACTAATAATGATAATAATAACACAGGTCCGTCCAAAACTGTGACCGAAATTATTGGCTCTTCATCTTCTACAACTATGCATGATAGTCGGAACTCGATTGATTGGACATTTTTGAACATGTTAGAAGAACATGGTTCAAGTAATGATGCTACTTTAGTTGGTTCTGAAAATTATGATGATTTTTTCTATTCTAACTTAGAAAAGATGCATTCGGATGAGTTATTGTATTACACTTCCCCACCGCTTTTTGAGGATAATAATAATCAGAACCAATTAGTTGAAGATGATGGTAATGACCCTTTTTGTCATCAATCATTCCTTTGGAGCTGGAACTTCTGA 726 0.3609 MDHHHISTDHDQVKGKTSLSSSGNDDDNNKKLYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPQKAARAFDAALYCLRGRHASFNFSDSPFHLENTAVSNDPQQIREIAANFGNKNPSIVIDNNNNNTNNDNNNTGPSKTVTEIIGSSSSTTMHDSRNSIDWTFLNMLEEHGSSNDATLVGSENYDDFFYSNLEKMHSDELLYYTSPPLFEDNNNQNQLVEDDGNDPFCHQSFLWSWNF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01537 241 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Vivi3g01537 241 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Vivi3g01537 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 168 - -
Vivi3g01537 241 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Vivi3g01537 241 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Vivi3g01537 241 MobiDBLite consensus disorder prediction 1 31 - -
Vivi3g01537 241 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Vivi3g01537 241 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Vivi3g01537 241 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Vivi3g01537 241 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Vivi3g01537 241 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01537 Vivi-Chr3 25324273 25325165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01537 33 190 AP2-EREBP Transcription Factor Family AT1G19210 50.314 5.37e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi3g01537 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01537 - - psat:127084170 357.451