Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01536 ATGAGTTTTCAATATCAGTACAGTCATGGTTCAAAATTAACTATATTATTAATTACTACTATACTACAAATGGATATCACTACTGATCATGTGAAAGGTAAGACCCCATCGTCTTCAACCAATTCAAGTGTTAATAATAATGATGGTAGCAACCAGAAGATGTATAGAGGTGTGAGAAAGAGGAAGTGGGGAAAATGGGTGTCTGAAATCCGGCTACCGAATAGCCGTGAAAGAATCTGGTTAGGATCATATGATTCACCTCATAAAGCTGCAAGAGCGTTCGATGCCGCACTTTACTGTCTTCGTGGTCGTCATGCAAGTTTTAACTTCCCTGATTCACCTTTTCATTTGGAAAACACTGCAGTTTCTAATGATCCGCAACAGATTCGAGATATTGCTGCTAACTTTGCCAACAAAACTGTTATTGATGGTAATAATAATAGTAATACTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACTGATCAATCCAAAACTGTGACTGAAATTATTGGCTCTTCGTCTTCTACTACTACTATGCATGGTAATGGTGGGAACTCGATTGATTGGACATTTTTGGATGTCTTGGACGGTTCAAGTAATGATACTAATTTTGATGGGTCTGAAAATTATGGTGGTTTCTATTCTGATCTAGAAATGATGAATTCGGGTGAGTTATTCAGTTTACCACAACAGCTACCACTATTTGAGGACAATATTCAAAAGGAAATAGTTAAAGGTGAAGGTGACGTTGATGTTTATGATGATCCTTTTTCTCATCAACCATTCCTTTGGAACTGGGACTTTTGA 831 0.3478 MSFQYQYSHGSKLTILLITTILQMDITTDHVKGKTPSSSTNSSVNNNDGSNQKMYRGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPHKAARAFDAALYCLRGRHASFNFPDSPFHLENTAVSNDPQQIRDIAANFANKTVIDGNNNSNTNNNNNNNNNNNNNNNNNTDQSKTVTEIIGSSSSTTTMHGNGGNSIDWTFLDVLDGSSNDTNFDGSENYGGFYSDLEMMNSGELFSLPQQLPLFEDNIQKEIVKGEGDVDVYDDPFSHQPFLWNWDF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01536 276 MobiDBLite consensus disorder prediction 30 53 - -
Vivi3g01536 276 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Vivi3g01536 276 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Vivi3g01536 276 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Vivi3g01536 276 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Vivi3g01536 276 MobiDBLite consensus disorder prediction 141 171 - -
Vivi3g01536 276 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Vivi3g01536 276 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Vivi3g01536 276 Pfam AP2 domain 55 103 IPR001471 GO:0003700|GO:0006355
Vivi3g01536 276 MobiDBLite consensus disorder prediction 30 55 - -
Vivi3g01536 276 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Vivi3g01536 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 184 - -
Vivi3g01536 276 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01536 Vivi-Chr3 25318701 25319928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01536 50 148 AP2-EREBP Transcription Factor Family AT1G19210 63.636 4.39e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g01536 AP2 5.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01536 - - vvo:131657735 506.908