Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01535 ATGGATATCACCACTGATCATGCGAAAGGTAAGACCCCATCATCTTCGAGTGATAATGATGATAGCTACAAGAAGATGTATAGAGGTGTGAGAAAGAGAAAGTGGGGAAAATGGGTATGTGAAATAAGGCTACCGAATAGCCGTGAAAGAATCTGGTTAGGATCATATGATTCACCAGAGAAAGCAGCAAGAGCTTTCGACGCTGCACTTTACTGTCTTCGTGGTCGTCATGCAACTTTTAACTTCCCTGATACACCTTTCCTCTTGGATACTACTGCAGTTTCTAATGATCCACAACAGATTCGAGAGATTGCTGCTAACTTTGCCAACAAAACACCACCAATTGTTATTCATGGTAATAATAATAGTAATACTAATAATAATAACAATACTGATCAATCCAAAACTGTGACTGAAATTATTGGCTCTTCGTCTTCCACTACTACTACTATGCATGGTAATGGTGGGAACTCCATTGATTGGACATTTTTGGATGTGTTGGATGGTTCAAGTAATGATGCAAATTTTGTTGGGTCTGAAAATTATGGTGGTTTCTATTCTGATCTAGAAAAAATGAATTCGGGTGAGTTATTCAGTTTACCACAACAGCTACCACTATTTGAGGACAATATTCAGAAGGAACTAGTTAAAGGTGAAGGTGATGATGATGTTTATGATGATGACCCTTTTTCTCATCAACCATTCCTTTGGAACTGGGACTTTTGA 726 0.3815 MDITTDHAKGKTPSSSSDNDDSYKKMYRGVRKRKWGKWVCEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHATFNFPDTPFLLDTTAVSNDPQQIREIAANFANKTPPIVIHGNNNSNTNNNNNTDQSKTVTEIIGSSSSTTTTMHGNGGNSIDWTFLDVLDGSSNDANFVGSENYGGFYSDLEKMNSGELFSLPQQLPLFEDNIQKELVKGEGDDDVYDDDPFSHQPFLWNWDF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01535 241 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Vivi3g01535 241 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vivi3g01535 241 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Vivi3g01535 241 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Vivi3g01535 241 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vivi3g01535 241 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Vivi3g01535 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 201 - -
Vivi3g01535 241 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g01535 241 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vivi3g01535 241 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Vivi3g01535 241 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01535 Vivi-Chr3 25314122 25314866 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01535 22 110 AP2-EREBP Transcription Factor Family AT1G19210 69.663 1.30e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi3g01535 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01535 - - vvo:131657735 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01535 3 25314122 25314866 Vivi3g01535 3 25314122 25314866 ECH