Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01534 ATGTTAATTCAAATTAACTATATTATTACTACTATACTACAAATGGATATCACCACTGATCATGTGAAAGGTAAGACACCATCTTCTTCAACCAATTCAAGTGGTAATGATGATGATAACAACAAGAAGATGTATAGAGGTGTGAGAAAAAGGAAGTGGGGAAAATGGGTATGTGAAATAAGGCTACCAAATAGCCGTGAAAGAATATGGTTAGGATCATATGATTCTCCTGAGAAAGCAGCAAGAGCGTTCGATGCTGCACTTTACTGTCTTCGTGGTCGTCATGCAACTTTCAATTTCCCTGATTCACCTTTTCATTTGGAAAACACTGCAACAGTTTCTAACAATCCACAACAGATTCGAGAGATTGCTGCTAACTTTGCCAACAAAACACCACCAATTGTTATTGATGGTAATAATAATAATATTAATAATAATAACAATACTGATCAATCCAAAACTGTGACTGAAATTATTGGCTCTTCGTCTTCCACTACTACTACTATGCATGATAATGTTCGGAACTCCATTGATTGGACATTTTTGGATGTGTTGGATGGTTCAAGTAATGATGCCAATTTTGTTGGGTCTGAAAATTATGGTGGTTTCTATTCTGATCTAGAAAAAATGAATTCGGGTGAGTTATTCAGTTTACCACAACAGCTACCACTATTTGAGGACAGCATTCAGCAGGAACTAGTTAAAGGTGAAGGTGATGATGATGTTTATGATGATGACCCTTTTTCTCATCAACCATTCCTTTGGAACTGGGACTTTTGA 780 0.3615 MLIQINYIITTILQMDITTDHVKGKTPSSSTNSSGNDDDNNKKMYRGVRKRKWGKWVCEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHATFNFPDSPFHLENTATVSNNPQQIREIAANFANKTPPIVIDGNNNNINNNNNTDQSKTVTEIIGSSSSTTTTMHDNVRNSIDWTFLDVLDGSSNDANFVGSENYGGFYSDLEKMNSGELFSLPQQLPLFEDSIQQELVKGEGDDDVYDDDPFSHQPFLWNWDF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01534 259 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vivi3g01534 259 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vivi3g01534 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 219 - -
Vivi3g01534 259 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Vivi3g01534 259 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Vivi3g01534 259 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Vivi3g01534 259 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Vivi3g01534 259 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Vivi3g01534 259 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vivi3g01534 259 MobiDBLite consensus disorder prediction 21 43 - -
Vivi3g01534 259 MobiDBLite consensus disorder prediction 21 38 - -
Vivi3g01534 259 Pfam AP2 domain 45 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01534 Vivi-Chr3 25296985 25297778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01534 45 131 AP2-EREBP Transcription Factor Family AT1G19210 71.264 4.44e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g01534 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01534 - - vvo:131657735 401.364