Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01506 ATGGGGATATATCTCAGCACTCCCAAAACTGAGAAATTTTCTGAAGATGGAGAGAGTGATAATCTTAGATATGGTTTATCGTCCATGCAAGGATGGCGTGCAACAATGGAAGATGCTCATGCTGCGTATACTGATCTGGATGAGTCTACTTCGTTTTTCGGTGTTTATGACGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTTTCTTCACCAACAGATGCTTAAAAGTGAAGCATACTTAGTTGGAGATATTGGAACCTCTCTTCAAGAATCATTTTTAAGAATGGATGAGATGATGCGTGGTCAGAGAGGATGGAGGGAGCTATCAATCTTGGGAGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGCTGATTTGGTCTCCACGAAGCAGCAATGGTATTAGCAGAGTTGATGATTGGGCTTGTGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACAGCCTGTGTTGCAGTTATTAGAAACAACCAACTTCTTGTCGCAAATGCTGGTGATTCACGTTGTGTAATATCTCGGAAGGGACAGGCATACAATTTGTCTATAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATTTCGAAAGCTGGTGGTTTTATTCATGCCGGAAGAGTAAATGGCAGTTTAAACCTTACAAGAGCTATTGGTGACATGGAATTTAAACAGAACAAATTTCTTCCTGCTGAAAAACAAGTTGTAACTGCCAATCCAGATATTAACACTGTTGAACTTTGTGATGAAGATGAATTTATGGTTCTAGCTTGTGATGGCATATGGGACTGCTTGTCAAGTCAACAATTGGTAGATTTTGTTCATGAACAACTGCGTTCGGAAACAAAACTGTCTGCTGTGTGCGAAAGAGTGTTTGACCGGTGTTTGGCACCATCAACTGCTGGTGGCGAAGGATGTGATAACATGACTATGATCTTGGTCCAGTTCAAAAAACCTGCTTAG 1002 0.4142 MGIYLSTPKTEKFSEDGESDNLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQMLKSEAYLVGDIGTSLQESFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSNGISRVDDWACEEGPHSDFAGPTSGSTACVAVIRNNQLLVANAGDSRCVISRKGQAYNLSIDHKPDLEIEKERISKAGGFIHAGRVNGSLNLTRAIGDMEFKQNKFLPAEKQVVTANPDINTVELCDEDEFMVLACDGIWDCLSSQQLVDFVHEQLRSETKLSAVCERVFDRCLAPSTAGGEGCDNMTMILVQFKKPA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01506 333 Gene3D - 1 330 IPR036457 -
Vivi3g01506 333 PANTHER PROTEIN PHOSPHATASE 2C 20 328 IPR015655 GO:0004722|GO:0006470
Vivi3g01506 333 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Vivi3g01506 333 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vivi3g01506 333 CDD PP2Cc 23 329 IPR001932 -
Vivi3g01506 333 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vivi3g01506 333 Pfam Protein phosphatase 2C 156 313 IPR001932 -
Vivi3g01506 333 SMART PP2C_4 13 327 IPR001932 -
Vivi3g01506 333 SMART PP2C_SIG_2 28 329 IPR001932 -
Vivi3g01506 333 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01506 Vivi-Chr3 24752832 24756756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01506 1 332 PP2C-type Phosphatase Gene Family AT2G25070 78.012 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01506 K17499 - gmx:100787778 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01506 3 24752832 24756756 Vivi3g01506 3 24752832 24756756 ECH
Vivi3g01506 3 24752832 24756756 Vivi3g01465 3 24210718 24214688 PCT