Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01491 ATGGAACCAACGTGCGTTGATACTTCTCTTAACCTCAACCTTGTCCCTTCTCAAGACACAGATGTTGCTATGGTTGCTAAGGTTTTGGTTGAAGAGCTGGAGCGTCTAAGTAATGAGAATAAGAAGTTAACTGAGAGGTTAAACCTCATGTGCGACAATTATATTGCGTTGCAGAAGCATTTAAACGAGTTCAAGAATCATGAATCAGTGATCACGCCGAGGAAGAGAAAGGTTGAGTGCATTGAAAATTGCACTACTACAACTAAGGAGGAGACATTCCAACAACATAACTCTTCTCCGAAAATTTCTAAGGTTCTTGTTCGAACAGATGCATCCAACCCTAGCTTATATGTGAGAGATGGATATCAATGGAGAAAATATGGTCAGAAAGTTACAAGAGATAATCCCTCTCCTAGGGCTTACTTCAAGTGCTCTTTTGCTCCATGCTGTCCTGTGAAGAAGAAGGTGCAGAGAAGTGTAGAAGATCCAAACGTGTTAGTGACAACATACGAAGGAGAGCACAACCATGCACATCACCAGCAAGCACAAACATCGTCAAACCAAAGTGAGGCCTCTACATATAATTCTGTTCCTTCTCCATTAGCTTCAACGCATGACTTGGTCTTGCCAAGAAAAGTACTAGTTGACAATGGTGTTCAAAGGTCGTCTATACACCAGTTGTTAGTTCAGCAACTGACAGCTTCTTTGACAAGAGATCATAATTTTAGGACAGCACTTGCCTCGGCAATTTCTGGAACAAGTTTGGATGTGGAAAAACGTTAG 783 0.4151 MEPTCVDTSLNLNLVPSQDTDVAMVAKVLVEELERLSNENKKLTERLNLMCDNYIALQKHLNEFKNHESVITPRKRKVECIENCTTTTKEETFQQHNSSPKISKVLVRTDASNPSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSFAPCCPVKKKVQRSVEDPNVLVTTYEGEHNHAHHQQAQTSSNQSEASTYNSVPSPLASTHDLVLPRKVLVDNGVQRSSIHQLLVQQLTASLTRDHNFRTALASAISGTSLDVEKR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01491 260 FunFam WRKY transcription factor 40 103 180 - -
Vivi3g01491 260 ProSiteProfiles WRKY domain profile. 113 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g01491 260 Gene3D WRKY domain 101 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g01491 260 Coils Coil 26 53 - -
Vivi3g01491 260 SUPERFAMILY WRKY DNA-binding domain 116 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g01491 260 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 26 252 IPR044810 GO:0003700
Vivi3g01491 260 MobiDBLite consensus disorder prediction 174 200 - -
Vivi3g01491 260 MobiDBLite consensus disorder prediction 179 200 - -
Vivi3g01491 260 Pfam WRKY DNA -binding domain 120 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g01491 260 SMART WRKY_cls 118 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01491 Vivi-Chr3 24654128 24655506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01491 6 252 WRKY Transcription Factor Family AT1G80840 42.105 1.14e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi3g01491 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01491 - - gmx:100127373 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01491 3 24654128 24655506 Vivi3g01455 3 23977430 23978752 PCT