Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01484 ATGGTGGTGAAGAAAAATAACGATCCAATTATGATATTCATCATGGTTACATGTTGGTGTCTAAATCTCTTGTTGGGAGGAATGGCACAAATTAGAAACGAAAGTACTGTAGTGAAAGTTGGAACTGTGCTTGATATTAGCAACGGAACAGTTGGGAAGATAGGATTGAGCTGCATCAACATGGCACTCTCAGATTTCTATCTCTCTCATTCTCACTACAAAACCAGAATCCAAATCATCGTCAGGGATTCTCATAGGGATGTCGTCAATGCAGCTGCACAAGCTTTGGATCTTATAAAAAATGAGAAAGTAGAAGCAATCATGGGACCAACAACAACAATGGAAGCAAATTTTGTGATTCAACTAGGAGACAAAGCTCACGTGCCCATTGTAACATTTTCTGCAACTAGCCCTTCACTTGCATCACTTCAAAGTCCATATTTTTTCCAAGTATCACAAACTGATTCAGCTCAACTACAAGCCATCACCACAATCATTCAAGCTTTTGGTTGGAAACAAGTGGTCCCTATTTATGTTGACAACAGTTTTGGTGAAGGACTCATTCCATACTTAACCAATGTTCTTCAACAACAGAATATTCAAGTTCCTTATCTTAGTGCAATTTCTCTCTCAGCCACAGATGATGCCATTACTCAAGAGCTTTACAAGATAATGACTACTATACAAACTAGAGTATTTGTTGTGCACATGTCAACAACTGTTGGCTCTAAACTTTTTACCTTAGCGAAAAAAATTGGGATGATGAGTCAAAGCTATGTTTGGATAGTAACTGATAGTATGGCTAATTTATTCAATTCGTTGAGTTTAGATGTCTGGGAATCGATGGAAGGAGTAATCGGTGTTAAGACTTATATTCCAAGAACGAAAAAGCTAGATGATTTTAGAGTTAGATGGAAGAGAAAATTCATGAGTGATAATCCATCTCTTGTTGACACAAATTTGAACGTTTTTGGAATATGGGCTTATGATGCAACAATTGCACTAGCAATGGCTATTGAGAAAGTTGGAAATGGAACCGCAAAATTTGGTTACAATGAGAGCAACACATCAAGCAATTATTATATACCTGAATTTGAAAGGTTTGGTATAGCAGAAAATGGTGAGAAATTGCGTGAAGCTTTGTTGAACAGTAGGTTTAGTGGTCTTAGTGGTGATTTTAATGTTTCTGATGGGAAGTTACAAGCATCAACTTATGAGATAGTTAATGTGATTGGTAATAGTGAAAAGAGGGTTGGATTTTGGACACCAGATAAGGGTTTGGCTAGAAATTTGGACACAAAAGACAAGAACAATAGTACATATTCTAGTTCTAGAAATGATCTTGGAACTATTATATGGCCAGGGGATATGTACTCTATTCCAAAGGGATGGGAAATTCCAACTATTGTTGGGAAGAAATTGAGGGTAGGAGTTCCAGTAAAAAATGGTAATAACTACACTGAATTTTTGAAAGTAGCACATGATAATGACACTAATTCAACACAAGCCACTGGCTTCTGCATTGATGTTTTCAAAGCTGTGGTGGAAGCGTTGCCTTATGGCTTACCGCAATATGAATTTGTTGCGTTTGCAAAGCCTGATGGGGAGATGGCAGGAACATATGACGAGTTGATCATGGAACTCTATCACGGGAAGTACGATGCAGTAGTGGGGGATATAACGATCACTACGAAGAGATCCAACTATGTTGATTTCACAATGCCATACACGGAATCTGGTGTGACAATGATTGTTTCAATGAAAGACAGCAGGAAGAAAAATGCATGGGCCTTTTTGAAGCCACTGACATGGCAACTTTGGGCAACAACTGCTTGTTCATTTGTGTTCATAGGATTCGTTGTTTGGGTTCTCGAACATAGAATAAACAACGATTTTAGGGGACCACCCTCTCATCAAATCGGCACAAGCTTATGGTTTTCGTTCTCAACTATGGTTTATGCTCATAGAGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTGGTAGTATGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACTGCGAGTTTGACTTCACTCTTAACAGTTGAACAACTAACCCCAGCTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATCTCAAAGGTTCTTTTGTTTATGGAATCTTGAAAGGCTTACAATTTCCAGATTCTCATCTCATTCCTTATCAATCAGCTGAAGAATGCAATGAGCTTTTCATAAAAGGAAGCGTAAATGGTGGTATTGACGCTGCTTTTGATGAAGTTCCTTATGTTAAGCACTTTCTTGGAGTTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACCGGTGGTTTCGGCTATGCGTTCCCTAAAGGTTCACCTCTTGTAGCAGACATTTCAAGGGCAATCCTAAATGTGACACAAGGAGAGAAAATGAAAACAATTGAGAATGCATGGTTCAAAGAGAGTAGTTGTCAAGATTCTAATACAGAAATCTCCACTAATAACAGTCTTGGACTTGAAAGCTTTTGGGGTCTATTTCTCATTGCAGGGATTGCTTCCCTATCAGCACTCGTAATATTCTTTGTCACATTTCTATATCAGCACAAACATATTTGGTTAAGCAATGATCAAAGTGCTTCAATATGGCAACGAGTTCGAGTCTTGGTAAGGATATTTGATCAAAGAGACTTGAACCGTCACAACACATTCAAGAAAAGTGAAAACAAAAATGAAAGAATTGTTAGTCCTCTTGATGCTGATTTAGGTTCAGTTGAGGCCTCTCCAGGTACACATTGTCCACCTAGTCCATCTAGCCAAACTGACTCAGTTGTTTCGGCTTACTGCGATTTAAGTGCCGACCATGGTAGTGCTAATCTACTTAGCTGTGCAGCAGATGGTAAAAACACTGAAATGGATGTTGTACAAATTACTAATCCAGAAGTTGAACCTGTGAACAACATGGCAACATCTATAACTGTAACATCAAGTTCCTAA 3012 0.3821 MVVKKNNDPIMIFIMVTCWCLNLLLGGMAQIRNESTVVKVGTVLDISNGTVGKIGLSCINMALSDFYLSHSHYKTRIQIIVRDSHRDVVNAAAQALDLIKNEKVEAIMGPTTTMEANFVIQLGDKAHVPIVTFSATSPSLASLQSPYFFQVSQTDSAQLQAITTIIQAFGWKQVVPIYVDNSFGEGLIPYLTNVLQQQNIQVPYLSAISLSATDDAITQELYKIMTTIQTRVFVVHMSTTVGSKLFTLAKKIGMMSQSYVWIVTDSMANLFNSLSLDVWESMEGVIGVKTYIPRTKKLDDFRVRWKRKFMSDNPSLVDTNLNVFGIWAYDATIALAMAIEKVGNGTAKFGYNESNTSSNYYIPEFERFGIAENGEKLREALLNSRFSGLSGDFNVSDGKLQASTYEIVNVIGNSEKRVGFWTPDKGLARNLDTKDKNNSTYSSSRNDLGTIIWPGDMYSIPKGWEIPTIVGKKLRVGVPVKNGNNYTEFLKVAHDNDTNSTQATGFCIDVFKAVVEALPYGLPQYEFVAFAKPDGEMAGTYDELIMELYHGKYDAVVGDITITTKRSNYVDFTMPYTESGVTMIVSMKDSRKKNAWAFLKPLTWQLWATTACSFVFIGFVVWVLEHRINNDFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLGRFVVVVWVFVVLILVQSYTASLTSLLTVEQLTPAITDVNQLLKNKMNVGYLKGSFVYGILKGLQFPDSHLIPYQSAEECNELFIKGSVNGGIDAAFDEVPYVKHFLGVYSCSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGEKMKTIENAWFKESSCQDSNTEISTNNSLGLESFWGLFLIAGIASLSALVIFFVTFLYQHKHIWLSNDQSASIWQRVRVLVRIFDQRDLNRHNTFKKSENKNERIVSPLDADLGSVEASPGTHCPPSPSSQTDSVVSAYCDLSADHGSANLLSCAADGKNTEMDVVQITNPEVEPVNNMATSITVTSSS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01484 1003 Gene3D - 374 473 - -
Vivi3g01484 1003 FunFam Glutamate receptor 595 725 - -
Vivi3g01484 1003 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 907 IPR015683 -
Vivi3g01484 1003 FunFam Glutamate receptor 370 472 - -
Vivi3g01484 1003 CDD GluR_Plant 472 825 - -
Vivi3g01484 1003 CDD PBP1_GABAb_receptor_plant 39 431 IPR044440 -
Vivi3g01484 1003 PIRSF IGluLR_plant 6 948 IPR017103 -
Vivi3g01484 1003 Gene3D - 595 725 - -
Vivi3g01484 1003 Pfam Bacterial extracellular solute-binding proteins, family 3 500 826 IPR001638 -
Vivi3g01484 1003 Pfam Receptor family ligand binding region 58 412 IPR001828 -
Vivi3g01484 1003 SUPERFAMILY Voltage-gated potassium channels 602 690 - -
Vivi3g01484 1003 FunFam Glutamate receptor 2.7 732 832 - -
Vivi3g01484 1003 SMART GluR_14 473 827 IPR001320 GO:0015276|GO:0016020
Vivi3g01484 1003 Gene3D - 474 594 - -
Vivi3g01484 1003 SUPERFAMILY Periplasmic binding protein-like II 451 828 - -
Vivi3g01484 1003 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Vivi3g01484 1003 SUPERFAMILY Periplasmic binding protein-like I 36 455 IPR028082 -
Vivi3g01484 1003 Gene3D - 747 832 - -
Vivi3g01484 1003 FunFam Glutamate receptor 158 319 - -
Vivi3g01484 1003 Gene3D - 156 320 - -
Vivi3g01484 1003 FunFam Glutamate receptor 473 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01484 Vivi-Chr3 24556802 24562821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01484 4 942 Ion Channels AT2G29120 49.367 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01484 K05387 - qsa:O6P43_019170 1160.59