Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01483 ATGGCGGTGAAGAAAAATAGTCATCCATTTATGATATTCATTGTTACATGTTGGTGTCTAAGTCTGTTGTTGGGTGGAATGGCACATATTAGAAACGAGAGTACTGTAGTGAAAGTTGGAGCTGTACTTGATATTAGCAATGGAACTGTTGGGAAGATAGGATTGAGCTGCATCAACATGGCACTCTCAGATTTCTATCATTCTCATTCTCACTACAAAACTAGAATTCAAATCATCGTCAGGGACTCTCATAGGGACATCGTCACTGCAGCTGAACAAGTTCGTGATCTCATAACAAATGAAAAAGTGCAAGCCATCATTGGACCAACAACAACAATGGAAGCAAATTATGTGATTCAACTTGGAGAGAAAGAACAAGTTCCCATTGTAACATTTTCTGCAACAAGTCCTTCACTTGCATCACTTCAAAGTCCATATTTTTTCCAAATATCACAAACCGATTCAGCTCAGGTGAATGCCATCACCTCAATTATTCAAGCTTTTGGTTGGAAACAAGTAGTCCCCATTTATGTTGAAAATAGTTTTGGTGAAGGACTCATTCCCTATTTAACCAATGTTCTTCAACAAGAAAATATTCAAGTTCCTTATCTTAGTGCAATTTCTCTTTCAGCCACAGATGATATTATCACTCAAAAGCTTTATAAAATAATGACTACGATACCAACTAGAGTATTTATTGTGCACATGTCACCAACTCTTGGATCTAAACTTTTTACCTTAGCAAACAAAATTGGGATGATGGGTGAAGGCTATGTTTGGATAGTAACTGATGGTATGACTAACTTATTCAATTCTTTGAATTTTTCTGAGAGGGAATCAATGGAAGGAGTAATTGGTGTTAGGACTTACATTCCAAGAACAAAAAAGCTAGATGATTTTAGTAAAAGATGGAAACGAAAATTTATAAGTGACAATCCAACACTTGTTGACACAAATTTGAACATTTTTGGTATATGGGCTTATGATGTAGCAATCGCATTAGCAATGGCTATTGAGAGAGTTGGTTTTACAAAAAATGGTGAGAAATTGAGTGAAGCTTTGTTGAACATTAGATTTAATGGTCTCAGTGGTGATTTTAATGTGGTTGAGGGGAAGTTACAAACATCAATATATGAGATAATTAATATGTTTGGTGATGGTGAAAAGAGGGTTGGTTTTTGGACACTACATAATGGGTTGTCTAAGAGTTTAAACACAAAAGGCCTAATAAGCAATAATAGCATATATTCTAGTTCTCAAAATGATCTTGGATCAATCATATGGCCAGGGGATATGTCCTCTATTCCAAAGGGATGGGAAATTCCAACTATTATTGGGAAGAAACTGAGGATAGGAGTTCCTTTACAAAAAAATCATAACCACACTGACTTTGTGGAAGCAACATTTGATCATAGTACCAACTCAATAAAAGTCACAGGTTTTTCCATTGATGTCTTCAAAGCTGCGGTAGAAATTTACCCCTTACCATATTATGAATTTGTTCCATTTACAATGCCTGATGGTCAGAACAAGATAGGAACCTACGAGGAGATGATCATTCAACTTTATCACGGGAAATATGATGCGGTAGTGGGGGATATAACAATCCTTGCAAACAGATCCAACTATGTTGATTTCACAATGCCCTACACAGAATCTGGTGTAACAATGGTTGTTTCAATGAAAGACAACAGGAAGAAAAATGCATGGGCCTTTTTGAAGCCATTGACATGGCAACTTTGGGTAACAACAGCTTGTTCATTTTTATTCATTGGATTTGTTGTTTGGGTTCTTGAACATAGAATAAACAACGATTTTAGAGGACCACCCTCTCATCAAATTGGCACAAGCTTATGGTTTTCCTTCTCAACTATGGTTTATGCTCATAGAGAGAAAGTGGTGAGCAACTTGGGTAGATTTGTGGTGGTTGTATGGGTTTTTGTTGTTCTAATTGTGGTTCAAAGTTACACCGCAAGTTTGGCTTCACTCTTAACAGTTGAACATCTAACCCCAGCTATTACAGATGTTAACCAACTTCTAAAGAATAAGATGAATGTTGGCTATCCCAAACGTTCTTTTGTTTATGGAATCTTGAAGGGCTTAAGTTTTCCAGATTATCAGCTCATTCCTTATCATTCAGCTGAAGAATGCAATGAGCTTTTCATAAAAGGAAGTGAAAATGGTGGCATTGATGCTGCATTTGATGAAGTTCCCTATGTTAAGGTCTTTCTTGCAACCTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAGACAGGTGGTTTTGGCTACGCATTCCCAAAAGGTTCACCTTATGTAGCTGGCATTTCAAGGGCAATCCTAAACATAACTCAAGGAGACAAAATGCGAAAACTTGAGAATGCATGGTTCAAAGAAGTTAGCTGTACTCAAGATTCTTATGCAAATATTTCCTTTAGCAACAGTCTTGGACTTGAAAGCTTTTGGGGTCTTTTTCTCATTGCAGGAGTTGCTTCCCTACTAGCACTCCTAATCTTTGTTGTCACGTTTTTACATCAGCACAAACATATTTGGTTAAACAATGATCAAAGTGCTTCAATATGGCGAATAATTCGTGTTTTGGCAAGGATATTTGATCAAAGAGACTTGGATTGTCACATATTCAAAAAAAGTGGAAATGGGAATCGAAATATTAGTCCTCGTGATGTTGACTCAGAAGCAGATGAGGCCTCTCCAGGCAGAGACTGTGCACCTAGTCCATCTAGTCAAGCTGAATCAAATGTTCCCATCGATGATGAAGATTTTTGTCAAAACACAGAAATGGATGCAGTGCAAATTGCTATACCAGAAGGTGCCTCTGATGACAACTGTGAAATTAACTCCCAAGAAACATGA 2880 0.3705 MAVKKNSHPFMIFIVTCWCLSLLLGGMAHIRNESTVVKVGAVLDISNGTVGKIGLSCINMALSDFYHSHSHYKTRIQIIVRDSHRDIVTAAEQVRDLITNEKVQAIIGPTTTMEANYVIQLGEKEQVPIVTFSATSPSLASLQSPYFFQISQTDSAQVNAITSIIQAFGWKQVVPIYVENSFGEGLIPYLTNVLQQENIQVPYLSAISLSATDDIITQKLYKIMTTIPTRVFIVHMSPTLGSKLFTLANKIGMMGEGYVWIVTDGMTNLFNSLNFSERESMEGVIGVRTYIPRTKKLDDFSKRWKRKFISDNPTLVDTNLNIFGIWAYDVAIALAMAIERVGFTKNGEKLSEALLNIRFNGLSGDFNVVEGKLQTSIYEIINMFGDGEKRVGFWTLHNGLSKSLNTKGLISNNSIYSSSQNDLGSIIWPGDMSSIPKGWEIPTIIGKKLRIGVPLQKNHNHTDFVEATFDHSTNSIKVTGFSIDVFKAAVEIYPLPYYEFVPFTMPDGQNKIGTYEEMIIQLYHGKYDAVVGDITILANRSNYVDFTMPYTESGVTMVVSMKDNRKKNAWAFLKPLTWQLWVTTACSFLFIGFVVWVLEHRINNDFRGPPSHQIGTSLWFSFSTMVYAHREKVVSNLGRFVVVVWVFVVLIVVQSYTASLASLLTVEHLTPAITDVNQLLKNKMNVGYPKRSFVYGILKGLSFPDYQLIPYHSAEECNELFIKGSENGGIDAAFDEVPYVKVFLATYSCSKYVMVEPRFKTGGFGYAFPKGSPYVAGISRAILNITQGDKMRKLENAWFKEVSCTQDSYANISFSNSLGLESFWGLFLIAGVASLLALLIFVVTFLHQHKHIWLNNDQSASIWRIIRVLARIFDQRDLDCHIFKKSGNGNRNISPRDVDSEADEASPGRDCAPSPSSQAESNVPIDDEDFCQNTEMDAVQIAIPEGASDDNCEINSQET 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01483 959 Pfam Ligand-gated ion channel 801 833 IPR001320 GO:0015276|GO:0016020
Vivi3g01483 959 SUPERFAMILY Periplasmic binding protein-like I 34 440 IPR028082 -
Vivi3g01483 959 CDD GluR_Plant 447 799 - -
Vivi3g01483 959 SUPERFAMILY Voltage-gated potassium channels 576 664 - -
Vivi3g01483 959 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 880 IPR015683 -
Vivi3g01483 959 Pfam Bacterial extracellular solute-binding proteins, family 3 475 800 IPR001638 -
Vivi3g01483 959 Gene3D - 569 692 - -
Vivi3g01483 959 Gene3D - 155 319 - -
Vivi3g01483 959 PIRSF IGluLR_plant 5 940 IPR017103 -
Vivi3g01483 959 Gene3D - 331 448 - -
Vivi3g01483 959 MobiDBLite consensus disorder prediction 891 928 - -
Vivi3g01483 959 FunFam Glutamate receptor 448 569 - -
Vivi3g01483 959 FunFam Glutamate receptor 569 699 - -
Vivi3g01483 959 SUPERFAMILY Periplasmic binding protein-like II 427 800 - -
Vivi3g01483 959 SMART GluR_14 450 801 IPR001320 GO:0015276|GO:0016020
Vivi3g01483 959 Gene3D - 713 806 - -
Vivi3g01483 959 Pfam Receptor family ligand binding region 57 383 IPR001828 -
Vivi3g01483 959 FunFam Glutamate receptor 153 309 - -
Vivi3g01483 959 Gene3D - 449 568 - -
Vivi3g01483 959 CDD PBP1_GABAb_receptor_plant 38 404 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01483 Vivi-Chr3 24540855 24556318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01483 1 930 Ion Channels AT2G29120 47.193 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01483 K05387 - qsa:O6P43_019170 1076.62