Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01478 ATGTCTTCCAAACTCTGCGACTCATGCCAATCCGCCACCGCGACTCTCTACTGCCGCCCTGACTCCGCCTTCCTCTGCGCCGCCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCCCGCCACCCTCGCGTCACTCTCTGCGAAGTCTGCGAGCAAGCACCTGCACACGTCACGTGCAAAGCCGATGCCGCCGCTCTCTGCATCTCCTGCGACCGTGACATCCACTCTGCTAACCCCCTCGCCGCTCGCCACGAGCGTCTTCCTATTACTCCTCTCTTCGAATCCACCATTTCTCAATCCGAGAAACCGCTTCACAATAACAAGCACTACGATGATTCTGTTAACGATGAAGCCGAAGCTGCTTCGTGGTTGATAACCGATCCTAAGGCGGATCTAAACTCATCTCCTTATATATTCTCAGATTCCGAAGCTATTCCGTTTATGGATCTCGATTACGGTGTTATCGAACATAAAAACGTCGACGGTGTAGTTCCTGATCACGGTAACTTCGATCTTTTTGCTTATGCGTTCAAAAACAACAACGTGCAGTCACATACGGAGGTAGAGACACCTACGCCGTCACAGTCGCAGATTAGTCACAGTGTGGTGTCATCGTCGATGGAGGTCGGAGTTGTTCCCGACGGAGACGTTGTATCGGAGATATCGAACGGTGGATACGTCAAGGCGGTGGCGGCGGATCGGGAAGCGAAGGTAATGAGGTATAGGGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACGATTCGTTACGCTTCTCGTAAAGCTTATGCGGAAACTAGGCCAAGGATCAAAGGGAGGTTTGCGAAGCGTACCGGTGCCGTTGATTCTACTTGTGGATACGGCGTCGTTCCCTCTTGTTAA 885 0.5232 MSSKLCDSCQSATATLYCRPDSAFLCAACDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAAALCISCDRDIHSANPLAARHERLPITPLFESTISQSEKPLHNNKHYDDSVNDEAEAASWLITDPKADLNSSPYIFSDSEAIPFMDLDYGVIEHKNVDGVVPDHGNFDLFAYAFKNNNVQSHTEVETPTPSQSQISHSVVSSSMEVGVVPDGDVVSEISNGGYVKAVAADREAKVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTGAVDSTCGYGVVPSC 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01478 294 CDD Bbox1_BBX-like 5 48 - -
Vivi3g01478 294 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vivi3g01478 294 ProSiteProfiles CCT domain profile. 236 278 IPR010402 GO:0005515
Vivi3g01478 294 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Vivi3g01478 294 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Vivi3g01478 294 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vivi3g01478 294 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vivi3g01478 294 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vivi3g01478 294 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 280 IPR045281 GO:0009909
Vivi3g01478 294 CDD Bbox1_BBX-like 48 91 - -
Vivi3g01478 294 Pfam CCT motif 236 278 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01478 Vivi-Chr3 24439535 24440745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01478 1 293 C2C2-CO-like Transcription Factor Family AT5G24930 48.913 2.10e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi3g01478 zf-B_box 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01478 - - gmx:100804201 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01478 3 24439535 24440745 Vivi3g01478 3 24439535 24440745 ECH