Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01465 ATGGGGATATATCTGAGTACTCCCAAAACTGAGAAATTTTCTGAAGATGGAGAAAGTGATAATCTTAGATATGGTTTATCGTCCATGCAAGGATGGCGTGCAACAATGGAAGATGCTCATGCTGCGTATACTGATCTGGATGAGTCTACTTCGTTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTTTCTTCACCAACAGATGCTTAAAAGTGAAGCATACTTGGTTGGAGATATTGGAACCTCTCTTCAAGAATCATTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGCTATCAATCTTGGGAGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGCTGATTTGGTCTCCACGAAGCAGCAATGGTATTAGCAGAGTTGATGATTGGGCTTGTGAGGAGGTAGGTCCGACATTCGAGGATAGTTTAATACTCGGGCCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACAGCCTGTGTTGCAGTTATTAGAAACAACCAACTTCTTGTCGCAAATGCTGGTGATTCACGTTGTGTAATATCTCGGAAGGGACAGGCATACAATTTGTCTATAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATTTCGAAAGCTGGTGGTTTTATTCATGCAGGAAGAGTAAATGGCAGTTTAAACCTTACAAGAGCTATTGGTGACATGGAATTTAAACAGAACAAATTTCTTCCTGCTGAAAAACAAGTTGTAACTGCCAATCCAGATATTAACACTGTTGAGCTTTGTGACGAAGATGAATTTATGGTTCTAGCTTGTGATGGCATATGGGACTGCTTGTCAAGTCAACAATTGGTAGATTTTGTTCATGAACAACTGCGTTCGGAAACAAAACTTTCCGCTGTGTGCGAAAGAGTGTTTGACCGGTGTTTGGCACCATCAACTGCTGGTGGCGAAGGATGTGATAACATGACTATGATCTTGGTCCAGTTCAAAAAACCTGCTCAGTCCAGTGCACCAGCACAAGACCAATCCTCATCAAAAGAACAAGCTGAATCACAAGTTGAACCGAAAGAAGTTTAG 1110 0.4135 MGIYLSTPKTEKFSEDGESDNLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQMLKSEAYLVGDIGTSLQESFLRMDEMMRGQRGWRELSILGDKINKFTGMIEGLIWSPRSSNGISRVDDWACEEVGPTFEDSLILGPHSDFAGPTSGSTACVAVIRNNQLLVANAGDSRCVISRKGQAYNLSIDHKPDLEIEKERISKAGGFIHAGRVNGSLNLTRAIGDMEFKQNKFLPAEKQVVTANPDINTVELCDEDEFMVLACDGIWDCLSSQQLVDFVHEQLRSETKLSAVCERVFDRCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPAQDQSSSKEQAESQVEPKEV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01465 369 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Vivi3g01465 369 Pfam Protein phosphatase 2C 168 324 IPR001932 -
Vivi3g01465 369 Gene3D - 1 341 IPR036457 -
Vivi3g01465 369 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vivi3g01465 369 ProSiteProfiles PPM-type phosphatase domain profile. 23 340 IPR001932 -
Vivi3g01465 369 CDD PP2Cc 23 340 IPR001932 -
Vivi3g01465 369 MobiDBLite consensus disorder prediction 343 369 - -
Vivi3g01465 369 MobiDBLite consensus disorder prediction 343 360 - -
Vivi3g01465 369 SUPERFAMILY PP2C-like 3 342 IPR036457 -
Vivi3g01465 369 PANTHER PROTEIN PHOSPHATASE 2C 20 339 IPR015655 GO:0004722|GO:0006470
Vivi3g01465 369 SMART PP2C_4 13 338 IPR001932 -
Vivi3g01465 369 SMART PP2C_SIG_2 28 340 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01465 Vivi-Chr3 24210718 24214688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01465 1 352 PP2C-type Phosphatase Gene Family AT2G25070 74.148 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01465 K17499 - gmx:100787778 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01465 3 24210718 24214688 Vivi3g01465 3 24210718 24214688 ECH
Vivi3g01506 3 24752832 24756756 Vivi3g01465 3 24210718 24214688 PCT