Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01449 ATGGCCAAATGTCACCGGAGCAACGTTGATTCCCTAGTTCTCGATCACCGACCTCATGCCAAAAACACCACCGCCGACAACTTCTGCATCTCCGCCTCGTCGATCCGCCGCATCATTTTCGACGCCGTGAGCTGCGGCGGAACTTCTCGGCACCGACATCGCCACCGCGTCGAACTCCACAACGATAAAGAAGAGAAGCATGAGAAGCTGTTGGATCTCCTGAACATACCGGTGCATGCAACGGATGCGGAATCGAAGAAGAAGGAGGAGATGCTGTTAGAGGTGAAGCGAGTGGTGAAGGAATTGCGTGAAGAGGATTCGACGAAGCGGCGAATGGCGGCGGCGAGAGTGAGGTTGCTGACGAAAGATGATGCAGAAGCGAGAGGCGCAGTCGCTATGCTCGGAGCAATTTCTCCTCTAGTCGGAATGCTTGATTCAGAAGACGTTTATTCGCAGATCGATTCTCTTTATGCATTGCTCAACATCGGAATCGGGAACGATGCAAATAAAGCAGCGATTGTAAAAGTTGGTGCTGTTCATAAGATGCTGAAGCTAATTGAATCTCCGGGTGCTGTTGTTAATTCGTCGGTTTCTGAGGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCTAACAAACCAATAATTGGATCCTCTGGTGCAATACCTTTCCTTGTTAGAACCCTTCAAAATCTCGATAAAAGTAGTAAAAGTAGTTCCCAAGTTAAGCAAGATGCTCTTCGGGCTCTTTACAATCTTTCAATCAATCAGGCCAACATTTCGTTTGTTTTGGAAACCGATTTGGTATTGTTTATGATAAATTCGATTGAAGATATGGAAGTGAGTGAGAGAGTCCTTTCAATTCTAAGCAATTTGGTGTCGACTCCAGAAGGTAGAAAAGCTATCAGTGCGGTTAAGGATGGGATTACAGTTTTGGTTGATGTATTGAGTTGGACAGATTCGCCTAAATGCCAAGAGAAAGCTTCATACATTTTGATGATCATGGCACACAAAGGTTATGCTGATAGGCAAACAATGATTGAGGCAGGGATTGTATCGGCATTGCTCGAGTTGACGCTTGTAGGTACTGCATTGGCGCAGAAAAGGGCATCGAGGATATTGGAATGTTTTAGGGTAGAAAAAGGGAAGCAGGTTTCTGGGAGATGTGATGGTGGGAACTTAAGTTTAACTGTCTCTGCGCCTATTTATGCCTCGTCTTCTTCGACGGATGGAGGAGGTAAAGAGTATTTAATGGAGGAGGTGAACATGATGAGTGATGAAAAGAAAGCAGTGAAGCAATTAGTTCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTCAAGAGAGCTAACTTGCGTCACGATTTCGTTCCGTCCGAGCGTTTTACTTCACTCACTTCGAGTTCGACATCAAAGAGCCTTCCATTTTGA 1437 0.4537 MAKCHRSNVDSLVLDHRPHAKNTTADNFCISASSIRRIIFDAVSCGGTSRHRHRHRVELHNDKEEKHEKLLDLLNIPVHATDAESKKKEEMLLEVKRVVKELREEDSTKRRMAAARVRLLTKDDAEARGAVAMLGAISPLVGMLDSEDVYSQIDSLYALLNIGIGNDANKAAIVKVGAVHKMLKLIESPGAVVNSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLQNLDKSSKSSSQVKQDALRALYNLSINQANISFVLETDLVLFMINSIEDMEVSERVLSILSNLVSTPEGRKAISAVKDGITVLVDVLSWTDSPKCQEKASYILMIMAHKGYADRQTMIEAGIVSALLELTLVGTALAQKRASRILECFRVEKGKQVSGRCDGGNLSLTVSAPIYASSSSTDGGGKEYLMEEVNMMSDEKKAVKQLVQQSLQNNMMKIVKRANLRHDFVPSERFTSLTSSSTSKSLPF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01449 478 Coils Coil 85 105 - -
Vivi3g01449 478 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 27 478 - -
Vivi3g01449 478 SUPERFAMILY ARM repeat 94 377 IPR016024 -
Vivi3g01449 478 Gene3D - 60 238 IPR011989 -
Vivi3g01449 478 SMART arm_5 211 257 IPR000225 GO:0005515
Vivi3g01449 478 SMART arm_5 124 164 IPR000225 GO:0005515
Vivi3g01449 478 SMART arm_5 297 339 IPR000225 GO:0005515
Vivi3g01449 478 SMART arm_5 166 210 IPR000225 GO:0005515
Vivi3g01449 478 SMART arm_5 258 296 IPR000225 GO:0005515
Vivi3g01449 478 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 222 261 IPR000225 GO:0005515
Vivi3g01449 478 Gene3D - 239 390 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01449 Vivi-Chr3 23844091 23846038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01449 78 383 U-box Gene Family AT2G23140 32.143 2.30e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01449 - - gmx:100796229 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05157 4 182915817 182918008 Vivi3g01449 3 23844091 23846038 PCT