Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01443 ATGAGTAGTTTGGTTGAGAGGCTTCGTGTAAGATCAGAACGCAAGCCGGTTTATAATATTGATGAGTCAGATGATGATGATTTTTTGCTTAAGAAACCTGGGACAAGTCAGGAAAAGTTTGAGAGGATAATCAGAAGTGATGCAAAAGAGGATTTATGTCAAGCCTGTGGTGAAAGTGAAGGTCTCTTGAGTTGTGAAACTTGCACCTATGCTTACCATTCTAGGTGTTTACTTCCACCACTCAAAGGTCCTGCTCCCGACAGCTGGAGGTGCCCTGAATGTGTTAGCCCTCTTACTGATATTGATAAGATATTAGATTGTGAGATGCGCCCTACTCAAGACAGTGATGGTGATGGTGATGGCGATGGCGATGGCGATGGCGACACTCCAAAATCTGGGTCAAAGCAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAGGGACTATCTTATCTGCACTGTGCATGGGTGCCAGAGAAAGAGTTTCAGAAAGCTTTTAAGAATCATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGTCATCCTCCAATACTTCAGATGAAGACTTTGTTGCCATCCGTCCCGAATGGACTACAGTTGATCGAATAATTGCTTGCAGGGGTGATAGCGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCATATGATGAATGTTATTGGGAATCTGAGTCTGATATTTCAGCATTTCAGCCGGAAATAGAAAGATTCAATCGATTTCGTTCTAGATCGAGCAAACTCGCTTCCATTAAGCAAAAAAGCCGTGTTAATGATGACCCTGAATTGAAGAAACAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCAAGTTTCTTTCAGGAGGTTCTCTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCTGATGAGATGGGACTTGGAAAAACTATTCAGAGTATTGCTTTCTTAGCATCTCTTTTTGAAGAGGGTGTCTCTAAACACCCACATCTGGTGGTTGCTCCACTTTCAACGCTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAGATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGCAGTGTTATCAGAGAATATGAATTTTACTTTCCCAAGAAAATGAAGAAGTTAAAGAAAAAGAAATCTGGTCATATGGTTAGCGAAAGTAAGCATGACAGAATAAAATTTGATGTCCTTTTGACATCATATGAGATGATCAACTTGGACACAACATCATTAAAACCTATAAAATGGGAGTGCATGATAGTCGATGAAGGTCACCGCCTCAAAAATAAGGATTCGAAATTATTTTCTTCTTTGAAGCAATATTTTACCAGACATCGTGCGCTCCTGACCGGAACTCCTCTTCAGAATAACTTGGACGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAATTCCAAGAAGAATTCAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCACCACATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTGCGAGTTGATTTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTGACCCGTAATTATCAGATATTAACCCGCCGTGGCGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATTGACGATCCAAAAGAAGCATTCAAACAATTGTTGGAATCATCAGGGAAGTTGCATTTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTTCTTATATACACCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTATTGCTCTTACAAGAAATGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGGGGTTTGGGGATAAACCTTGCAACTGCTGACACGGTTGTTATATATGACAGTGATTGGAATCCTCATGCTGACTTACAAGCAATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTGTAACAAGAGGAACGATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTCGTAGGAAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGCTGGATGACATTATACGGTATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATTGATAGGTTGCTGGACCGTGACCAAGTTGTAGATGAAGATACTACTTTGGATGATGAAGAGGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCAGCAGAAGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGTGAACAGTTCAGAAAGAACACATTATTGGGAAGAGTTGTTAAAAGACAAGTTTCAAGAGCATAAAGTTGAGGAGTTTAATGCTTTGGGCAAAGGGAAGCGAAACCGCAAGTTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGTCTGGAAGATGTAAGCTCTGACGAAGACGACAATTATGAAGCAGAACTTACTGACGGTGATTCAAATTCCACTGGAACTACTTCTAGTAGAAGGCCGTATAAGAAAAAAGCACGCACAGCGGATAACGCAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTACTTGGTTTTAATCAAAATCAAAGGGCTGCCTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTATGGAGCCCTTTTCTTATCTCACATTGCTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGTTAAGGGACAAAGTGAGGTTTGCATCGGAATATCCTCGAACTCCACTGTTTTCAGAAGACATCTTATTACGTTATCCGGGTTTGAAGGGTGTAAGGAAGTGGAAGGAGGAGCATGATCTTTTGCTACTGCGTGCTGTGTTAAAGCATGGTTATGGAAGGTGGCAAGCTATTGTAGATGATAAGGATCTGAAGATTCAGGAGACCATCTGCCAGGAGTTGAATCTTCCCGTTATAAATTTACCAGGACCAGGGCAAGTTGGCTCTCATGTACAAAATGGTGCGAATTTGGCAAATGCAGAAGTGCCCAGCAATGAATCCAGGGAAAATGGTGGAAGTGACTTGGCAGCTGATGGTGCACAGGGTTCAAGCGATGCTAGGAATCAACCACAACTATATCCAGACTCATCCATGATATATCATTTTAGAGACATGCAAAGAAGACAGGTTGAGTTTGTAAAGAAGAGGGTTCTTCTTTTGGAAAAGGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAACCGGCGAAGTAACTAATGAAGAACTTAAAAGTGAACTCAAGTCTACCAGTGTTCCAAGTTATAAATCAGTGGATACTAATACCCAAATGATTGATCAATTGCCACAAGTAGAAACCATAGCTCCAGAAGATGTTTCAGTTGCTTGTGATAGTGATCCAAATCGATTGGAGTTAGTTCGACTTTACAACGAGATGTGCAAAGTAGTTGAGGAAAATCCCATGGATTTAGTTCAAGCTTCATTGGCAGAACCAGCAGAGGTCAATGCAGTGAAGAAGTTGACGCCACTAGAAACCATCAGTGAAAATATTAACAGAATCTTGACACCCACAGTAGTAGAAACTCCACTATTAAATTCAGACAACAAATCAGAGGCTACCCCTCAAAATGATTGCAAACTTGATTCCTCAGCAGATGACAAGCCTCGAGACATGGAAATAGAATGTGATCCTATAAAAGGAAACTGCTCAAGCCTCAGAGACGAGAACAAGGAAACACCCGAGAAAATTAAAAGTAATACTGAGATGGATGAAAGTCATGCTGAGTTGAATGAGAATTCTGACACTGGAGTCATTGTATTGGATGAGTAA 4302 0.41 MSSLVERLRVRSERKPVYNIDESDDDDFLLKKPGTSQEKFERIIRSDAKEDLCQACGESEGLLSCETCTYAYHSRCLLPPLKGPAPDSWRCPECVSPLTDIDKILDCEMRPTQDSDGDGDGDGDGDGDTPKSGSKQIFVKQYLVKWKGLSYLHCAWVPEKEFQKAFKNHPRLKTKVNNFHRQMSSSNTSDEDFVAIRPEWTTVDRIIACRGDSDEREYLVKWKELPYDECYWESESDISAFQPEIERFNRFRSRSSKLASIKQKSRVNDDPELKKQQKEFQQYEHSPKFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSKHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYFPKKMKKLKKKKSGHMVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYFTRHRALLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVVDEDTTLDDEEEDGFLKAFKVANFEYVDEAEAAAEAAAEEAAQKRAMETVNSSERTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTSSRRPYKKKARTADNAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGALFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLLRDKVRFASEYPRTPLFSEDILLRYPGLKGVRKWKEEHDLLLLRAVLKHGYGRWQAIVDDKDLKIQETICQELNLPVINLPGPGQVGSHVQNGANLANAEVPSNESRENGGSDLAADGAQGSSDARNQPQLYPDSSMIYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKTGEVTNEELKSELKSTSVPSYKSVDTNTQMIDQLPQVETIAPEDVSVACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAEPAEVNAVKKLTPLETISENINRILTPTVVETPLLNSDNKSEATPQNDCKLDSSADDKPRDMEIECDPIKGNCSSLRDENKETPEKIKSNTEMDESHAELNENSDTGVIVLDE 1433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01443 1433 SUPERFAMILY Chromo domain-like 65 185 IPR016197 -
Vivi3g01443 1433 Coils Coil 849 869 - -
Vivi3g01443 1433 SMART ultradead3 291 506 IPR014001 -
Vivi3g01443 1433 MobiDBLite consensus disorder prediction 1371 1421 - -
Vivi3g01443 1433 Pfam CHD subfamily II, SANT-like domain 947 1081 IPR009462 GO:0003677|GO:0006338
Vivi3g01443 1433 CDD CD2_tandem 199 250 - -
Vivi3g01443 1433 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 623 784 IPR001650 -
Vivi3g01443 1433 Pfam Chromo (CHRromatin Organisation MOdifier) domain 129 168 IPR023780 -
Vivi3g01443 1433 Pfam Chromo (CHRromatin Organisation MOdifier) domain 202 250 IPR023780 -
Vivi3g01443 1433 Gene3D - 287 539 IPR038718 -
Vivi3g01443 1433 Gene3D - 99 184 - -
Vivi3g01443 1433 ProSiteProfiles Chromo and chromo shadow domain profile. 99 191 IPR000953 -
Vivi3g01443 1433 SMART DUF1086_2 926 1084 IPR009462 GO:0003677|GO:0006338
Vivi3g01443 1433 Pfam CHD subfamily II, DUF1087 859 917 IPR009463 -
Vivi3g01443 1433 ProSiteProfiles Chromo and chromo shadow domain profile. 201 250 IPR000953 -
Vivi3g01443 1433 CDD SF2_C_SNF 618 744 - -
Vivi3g01443 1433 MobiDBLite consensus disorder prediction 109 133 - -
Vivi3g01443 1433 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Vivi3g01443 1433 Pfam PHD-finger 53 95 IPR019787 -
Vivi3g01443 1433 Gene3D - 540 764 IPR027417 -
Vivi3g01443 1433 SMART chromo_7 98 177 IPR000953 -
Vivi3g01443 1433 SMART chromo_7 199 253 IPR000953 -
Vivi3g01443 1433 Pfam Helicase conserved C-terminal domain 621 733 IPR001650 -
Vivi3g01443 1433 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 46 1367 - -
Vivi3g01443 1433 SUPERFAMILY Chromo domain-like 187 251 IPR016197 -
Vivi3g01443 1433 MobiDBLite consensus disorder prediction 919 936 - -
Vivi3g01443 1433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 530 IPR027417 -
Vivi3g01443 1433 Gene3D - 1051 1226 - -
Vivi3g01443 1433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 788 IPR027417 -
Vivi3g01443 1433 CDD CD1_tandem 101 181 - -
Vivi3g01443 1433 SMART PHD_3 52 95 IPR001965 -
Vivi3g01443 1433 MobiDBLite consensus disorder prediction 919 966 - -
Vivi3g01443 1433 MobiDBLite consensus disorder prediction 1355 1433 - -
Vivi3g01443 1433 SMART helicmild6 649 733 IPR001650 -
Vivi3g01443 1433 SMART DUF1087_2 854 920 IPR009463 -
Vivi3g01443 1433 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Vivi3g01443 1433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 98 IPR013083 -
Vivi3g01443 1433 Gene3D - 189 250 - -
Vivi3g01443 1433 MobiDBLite consensus disorder prediction 1162 1193 - -
Vivi3g01443 1433 MobiDBLite consensus disorder prediction 1355 1370 - -
Vivi3g01443 1433 Pfam SNF2-related domain 315 596 IPR000330 GO:0005524|GO:0140658
Vivi3g01443 1433 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 307 495 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01443 Vivi-Chr3 23581986 23602604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01443 612 784 RAD5 or RAD16-like Gene Family AT5G22750 31.792 2.69e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g01443 SNF2_N 1.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01443 K11643 - gmx:100790230 2382.83