Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01442 ATGAGTAGTTTGGTTGAGAGGCTTCGTGTAAGATCAGAACGCAAGCCGGTTTATAATATTGATGAGTCAGATGATGATGATTTTTTGCTTAAGAAACCTGGGACAAGTCAGGAAAAGTTTGAGAGGATAATCAGAAGTGATGCAAAAGAGGATTTATGTCAAGCCTGTGGTGAAAGTGAAGGTCTCTTGAGTTGTGAAACTTGCACCTATGCTTACCATTCTAGGTGTTTACTTCCACCACTCAAAGGTCCTGCTCCCGACAGCTGGAGGTGCCCTGAATGTGTTAGCCCTCTTACTGATATTGATAAGATATTAGATTGTGAGATGCGCCCTACTCAAGACAGTGATGGTGATGGTGATGGCGATGGCGATGGCGATGGCGACACTCCAAAATCTGGGTCAAAGCAAATTTTTGTTAAACAATACCTTGTTAAGTGGAAGGGACTATCTTATCTGCACTGTGCATGGGTGCCAGAGAAAGAGTTTCAGAAAGCTTTTAAGAATCATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGTCATCCTCCAATACTTCAGATGAAGACTTTGTTGCCATCCGTCCCGAATGGACTACAGTTGATCGAATAATTGCTTGCAGGGGTGATAGCGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCATATGATGAATGTTATTGGGAATCTGAGTCTGATATTTCAGCATTTCAGCCGGAAATAGAAAGATTCAATCGATTTCGTTCTAGATCGAGCAAACTCGCTTCCATTAAGCAAAAAAGCCGTGTTAATGATGACCCTGAATTGAAGAAACAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCAAGTTTCTTTCAGGAGGTTCTCTACACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACACATGTTATACTTGCTGATGAGATGGGACTTGGAAAAACTATTCAGAGTATTGCTTTCTTAGCATCTCTTTTTGAAGAGGGTGTCTCTAAACACCCACATCTGGTGGTTGCTCCACTTTCAACGCTGCGAAACTGGGAACGTGAATTTGCAACATGGGCCCCTCAGATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGCAGTGTTATCAGAGAATATGAATTTTACTTTCCCAAGAAAATGAAGAAGTTAAAGAAAAAGAAATCTGGTCATATGGTTAGCGAAAGTAAGCATGACAGAATAAAATTTGATGTCCTTTTGACATCATATGAGATGATCAACTTGGACACAACATCATTAAAACCTATAAAATGGGAGTGCATGATAGTCGATGAAGGTCACCGCCTCAAAAATAAGGATTCGAAATTATTTTCTTCTTTGAAGCAATATTTTACCAGACATCGTGCGCTCCTGACCGGAACTCCTCTTCAGAATAACTTGGACGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAATTCCAAGAAGAATTCAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGCTGGCACCACATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTGCGAGTTGATTTGAGCAGCAAACAGAAAGAATATTATAAGGCGATTTTGACCCGTAATTATCAGATATTAACCCGCCGTGGCGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATTGACGATCCAAAAGAAGCATTCAAACAATTGTTGGAATCATCAGGGAAGTTGCATTTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTTCTTATATACACCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTATTGCTCTTACAAGAAATGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGGGGTTTGGGGATAAACCTTGCAACTGCTGACACGGTTGTTATATATGACAGTGATTGGAATCCTCATGCTGACTTACAAGCAATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTGTAACAAGAGGAACGATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACACCTTGTCGTAGGAAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGCTGGATGACATTATACGGTATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGAAAATCCCGTCAAATCCATTATGATGCAGCTGCTATTGATAGGTTGCTGGACCGTGACCAAGTTGTAGATGAAGATACTACTTTGGATGATGAAGAGGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCAGCAGAAGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAAACCGTGAACAGTTCAGAAAGAACACATTATTGGGAAGAGTTGTTAAAAGACAAGTTTCAAGAGCATAAAGTTGAGGAGTTTAATGCTTTGGGCAAAGGGAAGCGAAACCGCAAGTTGATGGTTTCTGTTGAGGAGGACGACCTTGCTGGTCTGGAAGATGTAAGCTCTGACGAAGACGACAATTATGAAGCAGAACTTACTGACGGTGATTCAAATTCCACTGGAACTACTTCTAGTAGAAGGCCGTATAAGAAAAAAGCACGCACGGATAACGCAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAAGCATTCAGAGTACTTGGTTTTAATCAAAATCAAAGGGCTGCCTTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTATGGAGCCCTTTTCTTATCTCACATTGCTGAAGATATAACTGATTCCTCTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGTTAAGGGACAAAGTGAGGTTTGCATCGGAATATCCTCGAACTCCACTGTTTTCAGAAGACATCTTATTACGTTATCCGGGTTTGAAGGGTGTAAGGAAGTGGAAGGAGGAGCATGATCTTTTGCTACTGCGTGCTGTGTTAAAGCATGGTTATGGAAGGTGGCAAGCTATTGTAGATGATAAGGATCTGAAGATTCAGGAGACCATCTGCCAGGAGTTGAATCTTCCCGTTATAAATTTACCAGGACCAGGGCAAGTTGGCTCTCATGTACAAAATGGTGCGAATTTGGCAAATGCAGAAGTGCCCAGCAATGAATCCAGGGAAAATGGTGGAAGTGACTTGGCAGCTGATGGTGCACAGGGTTCAAGCGATGCTAGGAATCAACCACAACTATATCCAGACTCATCCATGATATATCATTTTAGAGACATGCAAAGAAGACAGGTTGAGTTTGTAAAGAAGAGGGTTCTTCTTTTGGAAAAGGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAACCGGCGAAGTAACTAATGAAGAACTTAAAAGTGAACTCAAGTCTACCAGTGTTCCAAGTTATAAATCAGTGGATACTAATACCCAAATGATTGATCAATTGCCACAAGTAGAAACCATAGCTCCAGAAGATGTTTCAGTTGCTTGTGATAGTGATCCAAATCGATTGGAGTTAGTTCGACTTTACAACGAGATGTGCAAAGTAGTTGAGGAAAATCCCATGGATTTAGTTCAAGCTTCATTGGCAGAACCAGCAGAGGTCAATGCAGTGAAGAAGTTGACGCCACTAGAAACCATCAGTGAAAATATTAACAGAATCTTGACACCCACAGTAGTAGAAACTCCACTATTAAATTCAGACAACAAATCAGAGGCTACCCCTCAAAATGATTGCAAACTTGATTCCTCAGCAGATGACAAGCCTCGAGACATGGAAATAGAATGTGATCCTATAAAAGGAAACTGCTCAAGCCTCAGAGACGAGAACAAGGAAACACCCGAGAAAATTAAAAGTAATACTGAGATGGATGAAAGTCATGCTGAGTTGAATGAGAATTCTGACACTGGAGTCATTGTATTGGATGAGTAA 4299 0.4099 MSSLVERLRVRSERKPVYNIDESDDDDFLLKKPGTSQEKFERIIRSDAKEDLCQACGESEGLLSCETCTYAYHSRCLLPPLKGPAPDSWRCPECVSPLTDIDKILDCEMRPTQDSDGDGDGDGDGDGDTPKSGSKQIFVKQYLVKWKGLSYLHCAWVPEKEFQKAFKNHPRLKTKVNNFHRQMSSSNTSDEDFVAIRPEWTTVDRIIACRGDSDEREYLVKWKELPYDECYWESESDISAFQPEIERFNRFRSRSSKLASIKQKSRVNDDPELKKQQKEFQQYEHSPKFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVSKHPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARSVIREYEFYFPKKMKKLKKKKSGHMVSESKHDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYFTRHRALLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDPKEAFKQLLESSGKLHLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVVIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVVDEDTTLDDEEEDGFLKAFKVANFEYVDEAEAAAEAAAEEAAQKRAMETVNSSERTHYWEELLKDKFQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDEDDNYEAELTDGDSNSTGTTSSRRPYKKKARTDNAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGALFLSHIAEDITDSSTFTDGVPKEGLRIQDVLVRIAVLLLLRDKVRFASEYPRTPLFSEDILLRYPGLKGVRKWKEEHDLLLLRAVLKHGYGRWQAIVDDKDLKIQETICQELNLPVINLPGPGQVGSHVQNGANLANAEVPSNESRENGGSDLAADGAQGSSDARNQPQLYPDSSMIYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKTGEVTNEELKSELKSTSVPSYKSVDTNTQMIDQLPQVETIAPEDVSVACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAEPAEVNAVKKLTPLETISENINRILTPTVVETPLLNSDNKSEATPQNDCKLDSSADDKPRDMEIECDPIKGNCSSLRDENKETPEKIKSNTEMDESHAELNENSDTGVIVLDE 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01442 1432 SUPERFAMILY Chromo domain-like 65 185 IPR016197 -
Vivi3g01442 1432 Coils Coil 849 869 - -
Vivi3g01442 1432 SMART ultradead3 291 506 IPR014001 -
Vivi3g01442 1432 CDD CD2_tandem 199 250 - -
Vivi3g01442 1432 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 623 784 IPR001650 -
Vivi3g01442 1432 Pfam CHD subfamily II, SANT-like domain 947 1080 IPR009462 GO:0003677|GO:0006338
Vivi3g01442 1432 Pfam PHD-finger 53 95 IPR019787 -
Vivi3g01442 1432 Gene3D - 287 539 IPR038718 -
Vivi3g01442 1432 Gene3D - 99 184 - -
Vivi3g01442 1432 ProSiteProfiles Chromo and chromo shadow domain profile. 99 191 IPR000953 -
Vivi3g01442 1432 MobiDBLite consensus disorder prediction 1161 1192 - -
Vivi3g01442 1432 Pfam CHD subfamily II, DUF1087 859 917 IPR009463 -
Vivi3g01442 1432 ProSiteProfiles Chromo and chromo shadow domain profile. 201 250 IPR000953 -
Vivi3g01442 1432 CDD SF2_C_SNF 618 744 - -
Vivi3g01442 1432 MobiDBLite consensus disorder prediction 1354 1432 - -
Vivi3g01442 1432 MobiDBLite consensus disorder prediction 109 133 - -
Vivi3g01442 1432 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Vivi3g01442 1432 Gene3D - 540 764 IPR027417 -
Vivi3g01442 1432 SMART chromo_7 98 177 IPR000953 -
Vivi3g01442 1432 SMART chromo_7 199 253 IPR000953 -
Vivi3g01442 1432 SUPERFAMILY Chromo domain-like 187 251 IPR016197 -
Vivi3g01442 1432 MobiDBLite consensus disorder prediction 919 936 - -
Vivi3g01442 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 530 IPR027417 -
Vivi3g01442 1432 MobiDBLite consensus disorder prediction 1354 1369 - -
Vivi3g01442 1432 Pfam Chromo (CHRromatin Organisation MOdifier) domain 129 168 IPR023780 -
Vivi3g01442 1432 Pfam Chromo (CHRromatin Organisation MOdifier) domain 202 250 IPR023780 -
Vivi3g01442 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 788 IPR027417 -
Vivi3g01442 1432 Pfam Helicase conserved C-terminal domain 621 733 IPR001650 -
Vivi3g01442 1432 MobiDBLite consensus disorder prediction 1370 1420 - -
Vivi3g01442 1432 CDD CD1_tandem 101 181 - -
Vivi3g01442 1432 SMART PHD_3 52 95 IPR001965 -
Vivi3g01442 1432 MobiDBLite consensus disorder prediction 919 966 - -
Vivi3g01442 1432 SMART helicmild6 649 733 IPR001650 -
Vivi3g01442 1432 SMART DUF1087_2 854 920 IPR009463 -
Vivi3g01442 1432 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Vivi3g01442 1432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 98 IPR013083 -
Vivi3g01442 1432 Gene3D - 189 250 - -
Vivi3g01442 1432 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 46 1366 - -
Vivi3g01442 1432 Gene3D - 1050 1225 - -
Vivi3g01442 1432 SMART DUF1086_2 926 1083 IPR009462 GO:0003677|GO:0006338
Vivi3g01442 1432 Pfam SNF2-related domain 315 596 IPR000330 GO:0005524|GO:0140658
Vivi3g01442 1432 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 307 495 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01442 Vivi-Chr3 23581986 23602604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01442 612 784 RAD5 or RAD16-like Gene Family AT5G22750 31.792 2.71e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g01442 SNF2_N 1.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01442 K11643 - gmx:100790230 2376.67