Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01441 ATGGTAATGGATGATTCCACTGATCTCTTCCCCATCGGAATGCGTGTTCTTGCCGTCGACGACGACCCCACTTGCCTCAAAGTCTTGGAAACTCTCCTCCGAAAGTGTGAATACCATGTAACCACAACTAGTCAAGCTATAGTGGCATTGAATATGCTGAGAGAGAACAAAGACAAGTTTGACTTGGTTATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTTCCTGTTATAATGTTGTCTGCGTATGGTGATACGAAGCTGGTGATGAAGGGGATTTCTCATGGTGCTTGTGATTATCTGTTGAAACCTGTGAGATTAGAGGAGTTAAAGAACATTTGGCAGCATGTGATTAGGAAGAAATCTGATTCAAAGGGGAAAAACAAAAGCAGCAAGCCAGATAACGCTACTTCTGATAGTGGCAGCGGACTGAGATCAGCGGGAACAGAAAATTCAGATGAAAATGGGAAGTTGACTAAGAAAAGGAAAGACCAGGATGAAGATGATGATGAGGATAAAGAGAATGGTAATGATAATGAGGACCCGTCAGCTCAGAAGAAGCCCCGAGTTGTTTGGTCTGTGGAGTTGCACCGCAAGTTTGTTGCTGCTGTAAATCACCTAGGCATCGACAAGGCTGTACCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATTACAAGGGAGAACGTGGCTAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTGGCAAACCAACAAGCTAGTATGGTGGCGGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGCACATTTTCACAGTAATGCTTTCCGATCTTTTTCACCTGGTGGAATAATTAGTAATCTGAACACTCCGGCTAGTCTGAATGGACACGGATTTTCTCCATCCGGACTACTTCAGTTGGGCCAATCACAAAATTTAAACAATTCTTCCAGTGACCAATTTAAATTCCAGTCGGCCATAAATCCCGTTAATCAGAATATTCTTCAGGGTATGCCAATGTCTATAGGGTATGATCACTTGCAAAACAGCAAGGGTGCTATTTCTCTTCAAAACTTGAATGCCGATGTAAAACCAACTTTTCCCATCCCGAGTCAATTCCCGGATCAAAGACCTAGAGTAACTACTACCTCTAGTTTTCATCCTCCAAGTCTCGGTATCTCAAACAATGCCTTGATGTCAGAAACACGCCCTGAAGGAAAACGAGGTATAGGAATAGGATATGAAAGTTCACCATCTTCTTCATTAACCTCTCAACATTCAGATTTTTCTTTCAGTATGCTTGATCAAGGTAGGCGTAGTGATGATTGGTCAAGTGCGGTTCAGTTATCCGGGATCCAAACAAATTCTTATCCTTCAAGTGAATGTTTTAGACAAACACCTATTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGGGGTATATCCTGGTGGTCAAACCCATGGTTCGTTGGCCGATATGCACTCCCAAGGAGGGATGTTTACTAATCCACCCGAGTATATAAACAGTAATTTACCGTTTCAGGGATGGGAAGACCATAATCAGGACGCTCCTTACCATTCAAATGTTACTTGTGGATCAGTTAACTCTCTCCCTCCAGTTAACGGTGCTGTTGTTCCTCCAGGCCAAACAACAACAAACTCGACCTTGCACAGAAGCATGGACACCAAGTTTTGTGATTCCATACAAATGAAGCATGCTGGATTCGTTGAATGCTCCACATCAAGACAACCTCGAGCGAACATCATAAGCCAACCGCAGTTTTCTAATAATCTTGGTTCACTGGAATACTTAGCGAGTTCAATGATGGAACAGGAGCAAGACAAGATGAAATTATTGGGCGGAGACTTCATATGCGATAACTACTCTGGCGGGGTATCTTTATGA 1959 0.4288 MVMDDSTDLFPIGMRVLAVDDDPTCLKVLETLLRKCEYHVTTTSQAIVALNMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKSDSKGKNKSSKPDNATSDSGSGLRSAGTENSDENGKLTKKRKDQDEDDDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNHLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSAHFHSNAFRSFSPGGIISNLNTPASLNGHGFSPSGLLQLGQSQNLNNSSSDQFKFQSAINPVNQNILQGMPMSIGYDHLQNSKGAISLQNLNADVKPTFPIPSQFPDQRPRVTTTSSFHPPSLGISNNALMSETRPEGKRGIGIGYESSPSSSLTSQHSDFSFSMLDQGRRSDDWSSAVQLSGIQTNSYPSSECFRQTPIPPSDNMASLPLQGVYPGGQTHGSLADMHSQGGMFTNPPEYINSNLPFQGWEDHNQDAPYHSNVTCGSVNSLPPVNGAVVPPGQTTTNSTLHRSMDTKFCDSIQMKHAGFVECSTSRQPRANIISQPQFSNNLGSLEYLASSMMEQEQDKMKLLGGDFICDNYSGGVSL 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01441 652 Gene3D - 13 148 - -
Vivi3g01441 652 Gene3D - 195 258 - -
Vivi3g01441 652 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vivi3g01441 652 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 343 IPR045279 GO:0009736
Vivi3g01441 652 MobiDBLite consensus disorder prediction 166 180 - -
Vivi3g01441 652 CDD REC_typeB_ARR-like 16 130 - -
Vivi3g01441 652 SUPERFAMILY CheY-like 13 133 IPR011006 -
Vivi3g01441 652 MobiDBLite consensus disorder prediction 133 201 - -
Vivi3g01441 652 FunFam Two-component response regulator 195 258 - -
Vivi3g01441 652 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 255 IPR017930 -
Vivi3g01441 652 SMART REC_2 14 126 IPR001789 GO:0000160
Vivi3g01441 652 PIRSF RR_ARR_type-B 1 650 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi3g01441 652 MobiDBLite consensus disorder prediction 385 413 - -
Vivi3g01441 652 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160
Vivi3g01441 652 MobiDBLite consensus disorder prediction 145 165 - -
Vivi3g01441 652 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Vivi3g01441 652 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Vivi3g01441 652 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Vivi3g01441 652 MobiDBLite consensus disorder prediction 391 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01441 Vivi-Chr3 23572714 23576149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01441 5 384 Response Regulator Gene Family AT2G25180 55.309 5.20e-127 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi3g01441 Response_reg 2.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01441 K14491 - gmx:100809002 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01441 3 23572714 23576149 Vivi3g01441 3 23572714 23576149 ECH
Vivi4g05154 4 182878472 182881440 Vivi3g01441 3 23572714 23576149 PCT