Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01440 ATGGAAACACAGAGTCAAGAACTACTGCAAAATCCACAAGAAATTGAGAAACACGACACTTATGAAGAAGAAAACAAGGTAAATCTAGATATTTTATTAGATCTGAATGTTCCTAACAACTATTGTGAGTCCAATCTAGTCACCACAACAGATGATTCTTCCAAAACTTTATCAGATGATTACACCCGCGGCTCTGAATTAGAGCCGCGGTATTTCTCTTGTAATTACTGCAAGAGAAAATTCTATAGTTCACAAGCATTAGGAGGACACCAAAACGCTCACAAGAGAGAGAGGTCAATTGCAAAAAGAGGACATAGGTTTATAGGAACACACATGATGCTGTCACCAACAGGAACAACCTCATTTTTTCAGAATCATGCTAATAGCCATAGTTTTAGACCACTTGGAATTAAGGCTCACTCTATGATTCAGAAGCCTTTTCATAACTTTTCATCCAATGGATTTGGAAGCACTTATTATGGATATAATGGTTGGTCAAGACCACTTATTATGAATCAACAACATGGAATAGGAAAGTTAGCTATGGAAACTTTCAAGGAAACAGGTTTATCATCACATGGAAGTGTTGGTAGATTCCAAGGGGTTGAAGAGGACATGGTGAATCAAGAAGAGGTGAAGCACCTTGACTTATCCTTAAAGCTCTAA 666 0.3754 METQSQELLQNPQEIEKHDTYEEENKVNLDILLDLNVPNNYCESNLVTTTDDSSKTLSDDYTRGSELEPRYFSCNYCKRKFYSSQALGGHQNAHKRERSIAKRGHRFIGTHMMLSPTGTTSFFQNHANSHSFRPLGIKAHSMIQKPFHNFSSNGFGSTYYGYNGWSRPLIMNQQHGIGKLAMETFKETGLSSHGSVGRFQGVEEDMVNQEEVKHLDLSLKL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01440 221 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Vivi3g01440 221 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Vivi3g01440 221 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 221 IPR044246 GO:0009788
Vivi3g01440 221 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g01440 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Vivi3g01440 221 Gene3D Classic Zinc Finger 50 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01440 Vivi-Chr3 23528771 23529672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01440 36 221 C2H2 Transcription Factor Family AT5G25160 38.356 1.18e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g01440 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01440 - - vvo:131655162 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05146 4 182751821 182753075 Vivi3g01440 3 23528771 23529672 PCT