Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi3g01436 | ATGCCGTCACATAAGACCTTCATGATCAAGAAGAAATTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTACTGGATCCGGATGAGGACCGACAACACCATCAGGTACAATGCTAAGCGTCGTCACTGGCGCCGCACCAAGCTTGGATTCTGA | 156 | 0.5 | MPSHKTFMIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF | 51 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi3g01436 | 51 | PANTHER | RIBOSOMAL PROTEIN L39E | 1 | 51 | - | - | |
| Vivi3g01436 | 51 | SUPERFAMILY | Ribosomal protein L39e | 3 | 50 | IPR023626 | - | |
| Vivi3g01436 | 51 | Gene3D | Ribosomal protein L39e | 1 | 51 | IPR023626 | - | |
| Vivi3g01436 | 51 | Pfam | Ribosomal L39 protein | 9 | 49 | IPR000077 | GO:0003735|GO:0005840|GO:0006412 | |
| Vivi3g01436 | 51 | FunFam | 60S ribosomal protein-like L39 | 1 | 51 | - | - | |
| Vivi3g01436 | 51 | Hamap | 50S ribosomal protein L39e [rpl39e]. | 1 | 51 | IPR000077 | GO:0003735|GO:0005840|GO:0006412 | |
| Vivi3g01436 | 51 | ProSitePatterns | Ribosomal protein L39e signature. | 30 | 46 | IPR020083 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi3g01436 | Vivi-Chr3 | 23279839 | 23280444 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi3g01436 | 1 | 51 | Cytoplasmic Ribosomal Protein Gene Family | AT4G31985 | 92.157 | 9.17e-31 | 99.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi3g01436 | K02924 | - | tcc:18587895 | 112.849 |