Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01433 ATGGCTTATCAAAACCACCAACTCTCTCAAGACCATTTCACTCAAGACGACTCCACCACCAAACCAACGTCCGAGCCTCACCAATCCTTCCAACCCGCACCCAACTGGCTCAACACCGCTCTCCTCCGTAACAACCCACCAACCACCAACAACACCAGTACCAATTTCCTCAACCTCCACTCCGCCGCCGCCTCTCAATCCTCCTCCCAATGGCCGATGATTGACGACTCTACCATCGCCGCCATGAAAGCACCGGAGAGCGCCGATGCAGAGGCGGAGGGATTAATGAACTGGCAGAAAGCGAAATATAAAGGAGAAATAATGGCGCATCCCTTGTACGAACAGCTTCTATCAGCACACGTGGCGTGTCTGAGAATCGCCACGCCGGTTGACCAGTTGCCGAGAATCGATGCTCAGCTGGCTGAGTCGCAGAATGTTGTTGCCAAGTACTCTGCCTTTGTTCAAGGCATGCTTGATGATGATAATAAACAACTCGATCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCATTCAAAGAACAGCTACAGCAACATGTTCGGGTCCATGCTATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGTTTTTACCACATGGTTCACAGGAGTTTCACCCGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAACAAGTGGACAGTGATACTAATCTGTTCGATGGAAATTTGGATGGTTCAGATAATAGTATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCTTAATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGATTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGAAAGAGACGAGCGGGGAAACTTCCCGGTGACACGACCTCAGTCCTTAAAGATTGGTGGCAATCACATGCAAAATGGCCTTATCCTACAGAAGAGGATAAGGCAAGGTTGGTACAAGAAACAGGTTTACAACTGAAACAGATCAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACTTCTAATGTCATGAAGAGCAAACGCAAGAGGTGA 1122 0.459 MAYQNHQLSQDHFTQDDSTTKPTSEPHQSFQPAPNWLNTALLRNNPPTTNNTSTNFLNLHSAAASQSSSQWPMIDDSTIAAMKAPESADAEAEGLMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQNVVAKYSAFVQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTVFTTWFTGVSPGEGTGATMSEDEDEQVDSDTNLFDGNLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQDYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVMKSKRKR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01433 373 Coils Coil 282 302 - -
Vivi3g01433 373 Gene3D - 297 358 - -
Vivi3g01433 373 MobiDBLite consensus disorder prediction 353 373 - -
Vivi3g01433 373 ProSiteProfiles 'Homeobox' domain profile. 296 359 IPR001356 GO:0003677
Vivi3g01433 373 Pfam ELK domain 276 297 IPR005539 GO:0003677
Vivi3g01433 373 CDD homeodomain 299 360 IPR001356 GO:0003677
Vivi3g01433 373 ProSiteProfiles ELK domain profile. 276 296 IPR005539 GO:0003677
Vivi3g01433 373 SUPERFAMILY Homeodomain-like 298 362 IPR009057 -
Vivi3g01433 373 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g01433 373 Pfam Homeobox KN domain 316 355 IPR008422 GO:0003677|GO:0006355
Vivi3g01433 373 SMART HOX_1 298 363 IPR001356 GO:0003677
Vivi3g01433 373 FunFam homeobox protein knotted-1-like 3 isoform X1 297 358 - -
Vivi3g01433 373 Pfam KNOX1 domain 103 144 IPR005540 GO:0003677|GO:0005634
Vivi3g01433 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 360 - -
Vivi3g01433 373 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Vivi3g01433 373 Pfam KNOX2 domain 161 209 IPR005541 GO:0003677|GO:0005634
Vivi3g01433 373 SMART KNOX2_2 154 210 IPR005541 GO:0003677|GO:0005634
Vivi3g01433 373 SMART ELK_2 276 297 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01433 Vivi-Chr3 23157160 23160210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01433 1 373 Homeobox Transcription Factor Family AT5G25220 62.014 1.46e-172 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi3g01433 KNOX2 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01433 - - pvu:PHAVU_009G090500g 504.982